View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10279_low_9 (Length: 233)
Name: NF10279_low_9
Description: NF10279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10279_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 51213621 - 51213853
Alignment:
| Q |
1 |
cagtagtcacaactcattcatagcatcaaattctatgccagccacactagtaggagggtctgaagttgttccttcagcaaaagcatcatcaactaaaact |
100 |
Q |
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| T |
51213621 |
cagtagtcacaactcattcatagcatcaaattctatgccagacacactagtaggagggtctgaagttgttccttcagcaaaagcatcatcaactaaaact |
51213720 |
T |
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| Q |
101 |
cgagatgtcccattttttctccttgtttatcttaacaagcctgaaatcccggtgttactcatgggagctctggcagcaacagtaaatggtgcaatgttac |
200 |
Q |
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| T |
51213721 |
cgagatgccccattttttctccttgcttatcttaacaagcctgaaatcccggtgttactcatgggagctctggcagcaacagtaaatggtgcaatgttac |
51213820 |
T |
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| Q |
201 |
ctattctgggccttctcatctccaaaatgataa |
233 |
Q |
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| T |
51213821 |
ctattctgggccttctaatctccaaaatgataa |
51213853 |
T |
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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 49736448 - 49736257
Alignment:
| Q |
45 |
cactagtaggagggtctgaagttgttccttcagcaaaagcatcatc---aactaaaactcgagatgtcccattttttctccttgtttatcttaacaagcc |
141 |
Q |
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|||||| ||||| ||||||| || ||||||||||| ||||||| || ||| |||| ||||||||||||| ||| || | ||||||||||||||| |
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| T |
49736448 |
cactagaaggagtgtctgaatttcttccttcagcagcagcatcacataaaagtaagactccagatgtcccatttcttcgtctcgcttatcttaacaagcc |
49736349 |
T |
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| Q |
142 |
tgaaatcccggtgttactcatgggagctctggcagcaacagtaaatggtgcaatgttacctattctgggccttctcatctccaaaatgataa |
233 |
Q |
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| T |
49736348 |
tgaaatcccggcgctactcattgggactctagcagcagcagtaattggagcaatgcaacctattctgggacttttagtctccaagatgataa |
49736257 |
T |
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