View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10280_high_1 (Length: 404)

Name: NF10280_high_1
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10280_high_1
NF10280_high_1
[»] chr7 (5 HSPs)
chr7 (23-133)||(16157174-16157284)
chr7 (23-133)||(21368462-21368572)
chr7 (26-127)||(22707516-22707614)
chr7 (205-296)||(44356652-44356743)
chr7 (129-166)||(21369457-21369494)
[»] chr3 (6 HSPs)
chr3 (23-133)||(33757787-33757897)
chr3 (23-126)||(13179704-13179807)
chr3 (23-126)||(13184362-13184465)
chr3 (129-166)||(13180726-13180763)
chr3 (129-166)||(13185260-13185297)
chr3 (129-166)||(33758804-33758841)
[»] chr2 (3 HSPs)
chr2 (23-133)||(21465086-21465196)
chr2 (23-133)||(44794571-44794681)
chr2 (23-133)||(44794894-44795004)
[»] scaffold0359 (1 HSPs)
scaffold0359 (23-133)||(8584-8694)
[»] scaffold0003 (1 HSPs)
scaffold0003 (23-133)||(289110-289220)
[»] chr8 (5 HSPs)
chr8 (23-133)||(18774121-18774231)
chr8 (23-133)||(16417373-16417483)
chr8 (39-133)||(17459690-17459784)
chr8 (205-296)||(20135328-20135419)
chr8 (129-166)||(18775140-18775177)
[»] chr6 (4 HSPs)
chr6 (23-133)||(21299213-21299323)
chr6 (26-133)||(9344249-9344353)
chr6 (129-166)||(12638793-12638830)
chr6 (129-166)||(21302617-21302654)
[»] chr4 (4 HSPs)
chr4 (23-133)||(11475790-11475900)
chr4 (129-166)||(34454924-34454961)
chr4 (26-114)||(34455906-34455994)
chr4 (129-166)||(11474846-11474883)
[»] chr1 (2 HSPs)
chr1 (23-133)||(37260555-37260665)
chr1 (129-157)||(37259621-37259649)
[»] scaffold0671 (2 HSPs)
scaffold0671 (23-133)||(2272-2382)
scaffold0671 (129-157)||(1227-1255)
[»] scaffold0065 (1 HSPs)
scaffold0065 (23-133)||(33597-33707)
[»] chr5 (2 HSPs)
chr5 (23-133)||(22821114-22821224)
chr5 (129-166)||(22825867-22825904)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-126)||(127181-127284)
[»] scaffold0512 (1 HSPs)
scaffold0512 (129-166)||(4-41)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 16157284 - 16157174
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||| |||||||    
T  16157284 taaaggcacaaaacactagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaatgaaaattatgtattgggattaattttgacaatga 16157185  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  16157184 tttgagttgaa 16157174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 21368462 - 21368572
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| |||||||    
T  21368462 taaaggcacaaaacacaggaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatga 21368561  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  21368562 tttgagttgaa 21368572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 22707516 - 22707614
Alignment:
Q  26 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgattt 125  Q
    ||||||||||| ||||||||| | | ||||||||||||    || |||||||||||||||||  ||||||||||||||||||| ||||| | ||||||||    
T  22707516 aggcacaaaacacaagaaatggaatgaaaatattgttat---aatgatgtgccaaaaggaaaagaaaattatgtattgggattaattttgataatgattt 22707612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 44356743 - 44356652
Alignment:
Q  205 gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat 296  Q
    |||| |||||| ||| |||||| || ||| | |||||||||||||| |  || |||||| ||||||||||  | ||||||||||||||||||    
T  44356743 gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat 44356652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 21369457 - 21369494
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  21369457 ttgaattgaagcacttgtgtcatggacaaccatgccct 21369494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 33757787 - 33757897
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||||||     
T  33757787 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgg 33757886  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  33757887 tttgagttgaa 33757897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 13179704 - 13179807
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  13179704 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 13179803  T
Q  123 tttg 126  Q
    ||||    
T  13179804 tttg 13179807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 13184362 - 13184465
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  13184362 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 13184461  T
Q  123 tttg 126  Q
    ||||    
T  13184462 tttg 13184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 13180726 - 13180763
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  13180726 ttgaattgaagcacttgtgtcatggacaaccatgccct 13180763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 13185260 - 13185297
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  13185260 ttgaattgaagcacttgtgtcatggacaaccatgccct 13185297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 33758804 - 33758841
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33758804 ttgaattgaagcacttgtgtcatggacaaccatgccct 33758841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 21465086 - 21465196
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  21465086 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 21465185  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  21465186 tttgagttgaa 21465196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 44794571 - 44794681
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  44794571 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 44794670  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  44794671 tttgagttgaa 44794681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 44795004 - 44794894
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  44795004 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 44794905  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  44794904 tttgagttgaa 44794894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 8584 - 8694
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  8584 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 8683  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  8684 tttgagttgaa 8694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 289220 - 289110
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  289220 taaaggctcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 289121  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  289120 tttgagttgaa 289110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 18774121 - 18774231
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  18774121 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 18774220  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  18774221 tttgagttgaa 18774231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 16417373 - 16417483
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||||| |||| ||||| |||||||    
T  16417373 taaaggcgcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgagattaattttgacaatga 16417472  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  16417473 tttgagttgaa 16417483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 17459690 - 17459784
Alignment:
Q  39 aagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa 133  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||    
T  17459690 aagaaatgatctaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa 17459784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 20135328 - 20135419
Alignment:
Q  205 gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat 296  Q
    |||| |||||| ||| |||||| || ||| | |||||||||||||| |  || |||||| ||||||||||  | ||||||||||||||||||    
T  20135328 gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat 20135419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 18775140 - 18775177
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  18775140 ttgaattgaagcacttgtgtcatggacaaccatgccct 18775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 21299213 - 21299323
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  21299213 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 21299312  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  21299313 tttgagttgaa 21299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 9344353 - 9344249
Alignment:
Q  26 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgattt 125  Q
    |||||||||||  || ||||| || || |||||| |||||||| | |||||||||||| |||  ||||||||||||| ||||| ||||| || |||||||    
T  9344353 aggcacaaaacaaaataaatggacaaataatatt-ttaatgaatg-atgtgccaaaag-aaacgaaaattatgtattaggattgattttgacgatgattt 9344257  T
Q  126 gagttgaa 133  Q
    ||||||||    
T  9344256 gagttgaa 9344249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 12638830 - 12638793
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12638830 ttgaattgaagcacttgtgtcatggacaaccatgccct 12638793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 21302617 - 21302654
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  21302617 ttgaattgaagcacttgtgtcatggacaaccatgccct 21302654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 11475900 - 11475790
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  11475900 taaaggcacaaaacttaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 11475801  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  11475800 tttgagttgaa 11475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 34454961 - 34454924
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34454961 ttgaattgaagcacttgtgtcatggacaattatgccct 34454924  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 34455994 - 34455906
Alignment:
Q  26 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaa-ataaaaattatgtattgggatttatttt 114  Q
    |||||||||||  |||||||  ||| |||||||||| ||||||| |||||| ||||||||| || |||||||| |||||||||| |||||    
T  34455994 aggcacaaaacataagaaatagactgaaaatattgtgaatgaaatgatgtg-caaaaggaacatgaaaattatatattgggattaatttt 34455906  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 11474883 - 11474846
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  11474883 ttgaattgaagcacttgtgtcatggacaaccatgccct 11474846  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 37260665 - 37260555
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  37260665 taaaggcacaaaacacaagaaatgaactaaaaatattgtcaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 37260566  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  37260565 tttgagttgaa 37260555  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 37259649 - 37259621
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaa 157  Q
    |||||||||||||||||||||||||||||    
T  37259649 ttgaattgaagcacttgtgtcatggacaa 37259621  T

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Target: scaffold0671 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 2382 - 2272
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||  ||||| ||||||||||||| ||||| |||||||    
T  2382 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaaaggtgtgccaaaaagaaacgaaaatcatgtattgggattaattttgacaatga 2283  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  2282 tttgagttgaa 2272  T

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Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 1255 - 1227
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaa 157  Q
    |||||||||||||||||||||||||||||    
T  1255 ttgaattgaagcacttgtgtcatggacaa 1227  T

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Target: scaffold0065 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 33597 - 33707
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||| |||||||||  |||| |||||||    
T  33597 taaaggcacaaaacacaagaaatgaactaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgcattgggattatttttgacaatga 33696  T
Q  123 tttgagttgaa 133  Q
    |||||||||||    
T  33697 tttgagttgaa 33707  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 22821114 - 22821224
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||  ||||||    
T  22821114 taaaggtacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttggcaatga 22821213  T
Q  123 tttgagttgaa 133  Q
     ||||||||||    
T  22821214 attgagttgaa 22821224  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 22825867 - 22825904
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  22825867 ttgaattgaagcacttgtgtcatggacaaccatgccct 22825904  T

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Target: scaffold0002 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 127284 - 127181
Alignment:
Q  23 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 122  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  127284 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 127185  T
Q  123 tttg 126  Q
    ||||    
T  127184 tttg 127181  T

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Target: scaffold0512 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 4 - 41
Alignment:
Q  129 ttgaattgaagcacttgtgtcatggacaattatgccct 166  Q
    |||||||||||||||||||||||||||||  |||||||    
T  4 ttgaattgaagcacttgtgtcatggacaaccatgccct 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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