View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10280_high_5 (Length: 249)
Name: NF10280_high_5
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10280_high_5 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4946968 - 4947206
Alignment:
| Q |
1 |
atattatttcataaataaacaatttcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaac |
100 |
Q |
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| T |
4946968 |
atattatttcataaataaacaatttcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaac |
4947067 |
T |
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| Q |
101 |
ctctaatgatgtgctatgtgattgtttgaaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgct |
200 |
Q |
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| T |
4947068 |
ctctaatgatgtgctatgtgattgtttgaaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgct |
4947167 |
T |
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| Q |
201 |
taatttcttttaagtcaattgtctccttagccgcctttg |
239 |
Q |
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| T |
4947168 |
taatttcttttaagtcaattgtctccttagccacctttg |
4947206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 11644 - 11879
Alignment:
| Q |
5 |
tatttcataaataaacaatttcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctct |
104 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11644 |
tatttcataaataaacaatttcataaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctct |
11743 |
T |
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| Q |
105 |
aatgatgtgctatgtgattgtttgaaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaat |
204 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11744 |
aatggtgtgctatgtgattgtttgaaaagtaaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaat |
11843 |
T |
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| Q |
205 |
ttc-ttttaagtcaattgtctccttagccgcctttg |
239 |
Q |
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| T |
11844 |
ttctttttaagtcaattgtctccttagctgcctttg |
11879 |
T |
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