View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10280_high_6 (Length: 229)
Name: NF10280_high_6
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10280_high_6 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 4945783 - 4945964
Alignment:
| Q |
3 |
agagactgactaagggtttctaactttctctatgtttcttactaatcagtaagattatgatgagatgggtaaaaggacagttttcgattgccatcaaagt |
102 |
Q |
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| T |
4945783 |
agagactgactaagggtttctaactttctctatgtttcttactaatcagtaagattatgatgagatgggtaaaaggacagttttcgattgccatcaaagt |
4945882 |
T |
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| Q |
103 |
tgcagctgcgaaagacgtgatttaccacttgtatggcagccacaacggggaaactcgaagtaatgccaggaaatggaagccac |
185 |
Q |
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| T |
4945883 |
tgcagctgcaaaagacgtgatttaccacttgtatggcagccacaac-gggaaactcgaagtaatgccaggaaatggaagccac |
4945964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 4946621 - 4946674
Alignment:
| Q |
176 |
tggaagccactattcatgatgtgtttccccatgcaagcatgcgaataacaatca |
229 |
Q |
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| T |
4946621 |
tggaagccactattcatgatgtgtttacccatgcaagcatgcgaataacaatca |
4946674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 42 - 229
Target Start/End: Original strand, 11159 - 11344
Alignment:
| Q |
42 |
tactaatcagtaagattatgatgagatgggtaaaaggacagttttcgattgccatcaaagttgcagctgcgaaagacgtgatttaccacttgtatggcag |
141 |
Q |
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| T |
11159 |
tactaatcagta-gattatgatgagatggg-aaaaggacagttttcgattgccctcaaagttgcagctgcgaaagacgtgatttaccacttgtatggcag |
11256 |
T |
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| Q |
142 |
ccacaacggggaaactcgaagtaatgccaggaaatggaagccactattcatgatgtgtttccccatgcaagcatgcgaataacaatca |
229 |
Q |
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| T |
11257 |
ccacaacggggaaactcgaagtaatgccaggaaatggaagccactattcatgatgtgtttccccatgcaagcatgcgaataacaatca |
11344 |
T |
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