View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10280_low_1 (Length: 457)
Name: NF10280_low_1
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10280_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 29067613 - 29067171
Alignment:
| Q |
1 |
agtacattcgaagtacttcaaaagcatattctagtggtgccaagatatagaaattgtgcactttgtcctttgtgatatttcataggaagcaaagtcaaaa |
100 |
Q |
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| T |
29067613 |
agtacattcgaagtacttaaaaagcatattctagtggtgccaagatatagaaattgagcactttgtcctttgtgatatttcataggaagcaaagtcaaaa |
29067514 |
T |
|
| Q |
101 |
ttcataggaattaggaagcaaagtcaaaaacaagatataaattcaaaagacaatgttagttttccaacaaaatttgatcttatatttcttgcaattggtt |
200 |
Q |
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| T |
29067513 |
ttcataggaattaggaagcaaagtcaaaaacaagatataaattcaaaagacaatgttagttttccaacaaattttgatcttatatttcttgcaattggtt |
29067414 |
T |
|
| Q |
201 |
tctgtaagctttgtgttttacagctaattgttaatgacctgttaatcataacttgttggaaagttaattttctcttcctcacacaattacagtagttcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
29067413 |
tctgtaagctttgtgttttacagctaattgttaatgacctgttaatcataacttgttggaaagttaattttctcttcctcacacaattacggtggttcta |
29067314 |
T |
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| Q |
301 |
ataaaaaagattatcataatgttaattaaattaaaaaaccatagtaaatattcaatgatttatcaggtgtcatacataagacaatgatttattcagttaa |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
29067313 |
ataaaagagattatcataatgttaattaaattaaaaaaccatagtaaatattcaatgatttatcaggtgccatacataacacaatgatttattcagttaa |
29067214 |
T |
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| Q |
401 |
atctctctttgtggccttttctctctttctaatagttgttttt |
443 |
Q |
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| T |
29067213 |
atctctctttgtggccttttctctctttctaatagttgttttt |
29067171 |
T |
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