View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10280_low_3 (Length: 356)
Name: NF10280_low_3
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10280_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 863834 - 863505
Alignment:
| Q |
20 |
atttgtgtccatatagaccgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcact |
119 |
Q |
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| T |
863834 |
atttgggtccatatagaccgttccaatcgatgaagtgaaaacaacacgtcgcactttagcttccgcggacgctataatcacattcttagttccattcact |
863735 |
T |
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| Q |
120 |
gctggctccaacatctcatcctattatatgttccataaaatgattaatttaccttataa--gttgctctttataaatg---ttatattttcgaatggaaa |
214 |
Q |
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| T |
863734 |
gctggctctaacatctcatcctattatatgttccataaaatgattaattcaccttataactgttacattttctatgtgaaattaaatttacaaatggaaa |
863635 |
T |
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| Q |
215 |
acaatgaaaataactcacagggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattggatagattgaagatcaaga |
314 |
Q |
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| T |
863634 |
acaaagaaaattccttacagggttgtcagtgacaggagaggctgtgtggaacacaccatggcaaccatgaacaacagattggatagattgaagatcaaga |
863535 |
T |
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| Q |
315 |
agatcaaccttatgcaaagttagcctctct |
344 |
Q |
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| T |
863534 |
agatcaaccttatgcaaagttaacctctct |
863505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 854049 - 853981
Alignment:
| Q |
227 |
actcacagggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattg |
295 |
Q |
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| T |
854049 |
actcacagggttgtcggtgacaggataggctgtgtggagtacaccatgacaagcatgaactacagattg |
853981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 45243017 - 45242914
Alignment:
| Q |
26 |
gtccatatagaccgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgctggc |
125 |
Q |
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| T |
45243017 |
gtccatatagactgcaccaattgatgatgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggc |
45242918 |
T |
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| Q |
126 |
tcca |
129 |
Q |
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|||| |
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| T |
45242917 |
tcca |
45242914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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