View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10280_low_4 (Length: 343)
Name: NF10280_low_4
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10280_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 24591146 - 24591488
Alignment:
| Q |
1 |
aaaagaggaaaattgaaaagtgggtccaatacttcttgaattggtcccatatttgctatatccaatcaagtaattgtttttgaatgaaatttttaatgta |
100 |
Q |
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| T |
24591146 |
aaaagaggaaaattgaaaagtgggtccaatacttcttgaattggtcccatatttgctatatccaatcaagtaattgtttttgaatgaaatttttaatgta |
24591245 |
T |
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| Q |
101 |
gcaatcggtcggtgtgactttctggcttttggttggcaagttaggccacatgctacttttggaatttttgtgaagggaccatatgatatagtgttgttat |
200 |
Q |
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| T |
24591246 |
gcaatcggtcggtgtgactttctggcttttggttggcaagttaggccacatgctacttttggaatttttgtgaagggaccatatgatatagtgttgttat |
24591345 |
T |
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| Q |
201 |
aatcaaggaaatcataggatttacaacttcaataacaccttgtataaatcttgttgaattagctccaatatgtatcatatgaagcacaagtatatcagaa |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24591346 |
aagcaaggaaatcataggatttacaacttcaataacaccttgtataaatcttgttgaattagctccaatatgtatcatatgaagcacaagtatatcagaa |
24591445 |
T |
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| Q |
301 |
tatcctaagagggactaacatgaagaggcagagagagtaatgc |
343 |
Q |
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| T |
24591446 |
tctcctaagagggacttacatgaagaggcagagagagtaatgc |
24591488 |
T |
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