View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10280_low_7 (Length: 251)

Name: NF10280_low_7
Description: NF10280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10280_low_7
NF10280_low_7
[»] chr4 (2 HSPs)
chr4 (1-236)||(52351350-52351585)
chr4 (94-225)||(20297086-20297217)
[»] chr5 (16 HSPs)
chr5 (9-195)||(30474773-30474959)
chr5 (89-220)||(29871658-29871789)
chr5 (90-225)||(30749116-30749251)
chr5 (89-225)||(30242867-30243003)
chr5 (65-225)||(30522117-30522277)
chr5 (65-225)||(30562457-30562617)
chr5 (90-225)||(30399550-30399685)
chr5 (129-225)||(30430467-30430563)
chr5 (89-225)||(30482876-30483012)
chr5 (89-225)||(30713917-30714053)
chr5 (90-175)||(17982400-17982485)
chr5 (100-137)||(30206008-30206045)
chr5 (89-225)||(17418652-17418788)
chr5 (2-34)||(17418846-17418878)
chr5 (2-34)||(30243049-30243081)
chr5 (2-34)||(30399459-30399491)
[»] chr7 (1 HSPs)
chr7 (90-225)||(26706817-26706952)
[»] chr1 (2 HSPs)
chr1 (89-221)||(7098896-7099028)
chr1 (90-155)||(7582284-7582349)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52351350 - 52351585
Alignment:
Q  1 ctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52351350 ctcaaacacttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccactgttgctccatgacaggc 52351449  T
Q  101 ataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351450 ataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctag 52351549  T
Q  201 ctttagatcacgtaactctgccaagttgtgccccgt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  52351550 ctttagatcacgtaactctgccaagttgtgccccgt 52351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 20297217 - 20297086
Alignment:
Q  94 gacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttc 193  Q
    |||| |||||||||  | |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc 20297118  T
Q  194 cttctagctttagatcacgtaactctgccaag 225  Q
    |  | || ||||||||||||||||||| ||||    
T  20297117 caccaagttttagatcacgtaactctgtcaag 20297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 30474773 - 30474959
Alignment:
Q  9 cttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattct 108  Q
    ||||||||||||||||||||||||||  | ||||||||    |||| || | |   |||||| ||||| |||| | || |||||||||| | ||||||||    
T  30474773 cttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttggtgtctcagtttcaccattattcctccatgacaaggataattct 30474872  T
Q  109 cggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttcct 195  Q
     ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | ||||||| | || ||||  |||||||||||||||    
T  30474873 tggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatttcccagaccttgtatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 29871658 - 29871789
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    ||||||||| ||||||||   | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag 29871757  T
Q  189 ttttccttctagctttagatcacgtaactctg 220  Q
    ||||||  | || |||||||||||||||||||    
T  29871758 ttttccaccgagttttagatcacgtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 30749116 - 30749251
Alignment:
Q  90 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 189  Q
    |||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt 30749215  T
Q  190 tttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30749216 tttccaccgaggtttagatcacgtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 30243003 - 30242867
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | || |  ||  || |||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag 30242904  T
Q  189 ttttccttctagctttagatcacgtaactctgccaag 225  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30242903 ttttccaccgaggtttagatcacgtaactctgtcaag 30242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 30522277 - 30522117
Alignment:
Q  65 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 164  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30522277 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30522178  T
Q  165 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30522177 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30522117  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 30562617 - 30562457
Alignment:
Q  65 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 164  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30562617 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30562518  T
Q  165 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30562517 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 30399550 - 30399685
Alignment:
Q  90 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 189  Q
    |||||||| |||||||||  | ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | ||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt 30399649  T
Q  190 tttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30399650 tttccaccgaggtttagatcacgtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  129 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 30482876 - 30483012
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  ||   |||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag 30482975  T
Q  189 ttttccttctagctttagatcacgtaactctgccaag 225  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30482976 ttttccaccgaggtttagatcacgtaactctgtcaag 30483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 30714053 - 30713917
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    ||||||||| | |||||||  | ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||    
T  30714053 tccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcag 30713954  T
Q  189 ttttccttctagctttagatcacgtaactctgccaag 225  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30713953 ttttccaccgaggtttagatcacgtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 17982400 - 17982485
Alignment:
Q  90 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggc 175  Q
    ||||||||||||||||||   ||||||||||||||| || ||||| || |||  ||| |||||||| || || ||||||| |||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgtaggc 17982485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 30206008 - 30206045
Alignment:
Q  100 cataattctcggaggtcttttttacccatcaaattggc 137  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 17418788 - 17418652
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    |||| |||| |||||||||| |||||||||||||||| ||||| || || ||| || | ||||||||  | | ||||| || || |||||  || ||||     
T  17418788 tccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaa 17418689  T
Q  189 ttttccttctagctttagatcacgtaactctgccaag 225  Q
    ||||||  | || |||||||||| ||||||| |||||    
T  17418688 ttttccaccgaggtttagatcacctaactctaccaag 17418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 17418878 - 17418846
Alignment:
Q  2 tcaaacacttgagatttgagtgaggttgaagca 34  Q
    |||| ||||||||||||||||||||||||||||    
T  17418878 tcaagcacttgagatttgagtgaggttgaagca 17418846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 30243081 - 30243049
Alignment:
Q  2 tcaaacacttgagatttgagtgaggttgaagca 34  Q
    |||| ||||||||||||||||||||||||||||    
T  30243081 tcaagcacttgagatttgagtgaggttgaagca 30243049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 30399459 - 30399491
Alignment:
Q  2 tcaaacacttgagatttgagtgaggttgaagca 34  Q
    |||| ||||||||||||||||||||||||||||    
T  30399459 tcaagcacttgagatttgagtgaggttgaagca 30399491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 26706817 - 26706952
Alignment:
Q  90 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 189  Q
    |||||||| |||||||| |  ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || ||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt 26706916  T
Q  190 tttccttctagctttagatcacgtaactctgccaag 225  Q
    |||||  | || ||||||||||||||||||| ||||    
T  26706917 tttccaccgaggtttagatcacgtaactctgtcaag 26706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 7098896 - 7099028
Alignment:
Q  89 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 188  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   |||    
T  7098896 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag 7098995  T
Q  189 ttttccttctagctttagatcacgtaactctgc 221  Q
     |||||| |||  ||||||||||||||||||||    
T  7098996 ctttcctcctaaatttagatcacgtaactctgc 7099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 7582349 - 7582284
Alignment:
Q  90 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 155  Q
    |||||||| |||||||||   ||||||||||||||||||||| ||||| ||| || | ||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataa 7582284  T

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