View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10281_high_1 (Length: 772)
Name: NF10281_high_1
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 13 - 754
Target Start/End: Complemental strand, 6383892 - 6383151
Alignment:
| Q |
13 |
gcataggcatagaatgagagatacctagactgcaaagaatactctttacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383892 |
gcataggcatagaatgagagatacctagactgcaaagaatactcttcacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
6383793 |
T |
|
| Q |
113 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggtgagttcgccaagaagatgacccaacctgtgagtgatctgcgagtgataggg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383792 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggcgagttccccaagaagatgacccaacctgtgagtgatctgcgagtgataggg |
6383693 |
T |
|
| Q |
213 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383692 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
6383593 |
T |
|
| Q |
313 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcaggtcgagtaaaacaaagata |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383592 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcaggtcgagtaaaacaaagata |
6383493 |
T |
|
| Q |
413 |
gataaggcgtccaacaagcctacggtacctttcaagattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383492 |
gataaggcgtccaacaagcctacggtacctttcaggattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
6383393 |
T |
|
| Q |
513 |
ggctttgctccaagtagcccggcttcactaataatatccaaagcatactttctctggcagagaaaaatcccagaaggcgatctcgccacttccaccccta |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6383392 |
ggctttgctccaagtagcccggcttcactaataatatccaaagcatactttctttggcagagaaaaatcccagaaggcgatctcgccacttccaccccca |
6383293 |
T |
|
| Q |
613 |
agaaatatttcaacaatcctaaatctttcatatggaaacaacgactcaagtattccttgaaccgttcaatcgaatcatgattatttccacaaatgatcaa |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383292 |
agaaatatttcaacaatcctaaatctttcatatggaaacaacgactcaagtattccttgaaccgttcaatcgaatcatgattatttccacaaatgatcaa |
6383193 |
T |
|
| Q |
713 |
atcatcaacgtaaactaaaaccacaagctgcacagttttatc |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383192 |
atcatcaacgtaaactaaaaccacaagctgcacagttttatc |
6383151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 13 - 754
Target Start/End: Original strand, 1617860 - 1618601
Alignment:
| Q |
13 |
gcataggcatagaatgagagatacctagactgcaaagaatactctttacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1617860 |
gcataggcatagaatgagagatatctagactgcaaagaatactcttcacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
1617959 |
T |
|
| Q |
113 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggtgagttcgccaagaagatgacccaacctgtgagtgatctgcgagtgataggg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1617960 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggcgagttccccaagaagatgacccaacctgtgagtgatctgcgagtgataggg |
1618059 |
T |
|
| Q |
213 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618060 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
1618159 |
T |
|
| Q |
313 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcaggtcgagtaaaacaaagata |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618160 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcaggtcgagtaaaacaaagata |
1618259 |
T |
|
| Q |
413 |
gataaggcgtccaacaagcctacggtacctttcaagattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618260 |
gataaggcgtccaacaagcctacggtacctttcaggattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
1618359 |
T |
|
| Q |
513 |
ggctttgctccaagtagcccggcttcactaataatatccaaagcatactttctctggcagagaaaaatcccagaaggcgatctcgccacttccaccccta |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1618360 |
ggctttgctccaagtagcccggcttcactaataatatccaaagcatactttctttggcagagaaaaatcccagaaggcgatctcgccacttccaccccca |
1618459 |
T |
|
| Q |
613 |
agaaatatttcaacaatcctaaatctttcatatggaaacaacgactcaagtattccttgaaccgttcaatcgaatcatgattatttccacaaatgatcaa |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618460 |
agaaatatttcaacaatcctaaatctttcatatggaaacaacgactcaagtattccttgaaccgttcaatcgaatcatgattatttccacaaatgatcaa |
1618559 |
T |
|
| Q |
713 |
atcatcaacgtaaactaaaaccacaagctgcacagttttatc |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618560 |
atcatcaacgtaaactaaaaccacaagctgcacagttttatc |
1618601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 549
Target Start/End: Complemental strand, 42573833 - 42573300
Alignment:
| Q |
13 |
gcataggcatagaatgagagatacctagactgcaaagaatactctttacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42573833 |
gcataggcatggaatgagagatacctagactgcaaagaatactcttcacccactttaactcgcaagttgtattagccatcgaacggtattcggattcagc |
42573734 |
T |
|
| Q |
113 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggtgagttcgccaagaagatgacccaacctgtgagtgatctgcgagtgataggg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42573733 |
agatgaccgagacacaacttgctgcttcttggtcttccaagagataggtgagttccccaaga---tgacccaacctgtgagtgatctgcgagtgataggg |
42573637 |
T |
|
| Q |
213 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42573636 |
caagctgcccagtcagcatcacaccacccgtgcagcttcatatcacttgtactgtcaagaaatataccttggcctggattccctttaagataccgcacca |
42573537 |
T |
|
| Q |
313 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcaggtcgagtaaaacaaagata |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42573536 |
cccttagcgcagcagtccaatggtcttctcgtggttgctgcataaactgagagagaatatggacactatacgacaactcgggtcgagtaaaacaaagata |
42573437 |
T |
|
| Q |
413 |
gataaggcgtccaacaagcctacggtacctttcaagattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42573436 |
gataaggcgtccaacaagcctacggtacctttcaggattttcaagaaactccccttgagcaagactgagattatggttctgctcgagtggagtcggcata |
42573337 |
T |
|
| Q |
513 |
ggctttgctccaagtagcccggcttcactaataatat |
549 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42573336 |
ggctttgctccaagtagcccgacttcactaataatat |
42573300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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