View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10281_high_11 (Length: 335)
Name: NF10281_high_11
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 46237998 - 46238313
Alignment:
| Q |
1 |
gatggacggagggctgttcaaatatatagttaattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacatccattcaacacc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46237998 |
gatggtcggagggctgttcaaatatatagtaaattatgtttagtggatggatagtaaatataacaatatgttggagatcattaaacatccattcaacacc |
46238097 |
T |
|
| Q |
101 |
atgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaatgtttgggccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238098 |
atgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaatgtttgggccaaa |
46238197 |
T |
|
| Q |
201 |
cctagggggaacattctcgctttaatgacatgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238198 |
cctagggggaacattctcgctttaatgacatgtcgacgtattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctca |
46238297 |
T |
|
| Q |
301 |
atattagcaggatctg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46238298 |
atattagcaggatctg |
46238313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 32 - 316
Target Start/End: Complemental strand, 46165158 - 46164873
Alignment:
| Q |
32 |
aattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacatccattcaacaccatgaaccacgactta-aatgtcattaaccac |
130 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| ||||||| ||||||||| |||| |||||||||| |||| |
|
|
| T |
46165158 |
aattatgtttagtagatcgatagtaaatataacaatatgtcgcaattcattaaccatccaatcaacacaatgaaccacaactttgaatgtcatta-ccac |
46165060 |
T |
|
| Q |
131 |
gtttggaccaagcgtaaattgaagttg-cctccagcaccccggtcgcagtccaacaaatgtttgggccaaacctagggggaacattctcgctttaatgac |
229 |
Q |
| |
|
|| ||||||||| | |||| |||||| || || ||| | |||| | ||||||||| ||||||||||||||||||||||||||||| ||| | |||| |
|
|
| T |
46165059 |
gtctggaccaagtgcaaatggaagttttccccccgcattctagtcggaatccaacaaaagtttgggccaaacctagggggaacattctatcttaagtgac |
46164960 |
T |
|
| Q |
230 |
atgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctcaatattagcaggatctg |
316 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46164959 |
atatcgatttattagtaactacgagttataccttgccatagtttgagaagttcgtcgccatcatatgctcaatattagcaggatctg |
46164873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University