View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_high_3 (Length: 553)
Name: NF10281_high_3
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 21 - 553
Target Start/End: Complemental strand, 11210756 - 11210224
Alignment:
| Q |
21 |
aacatgccaagtccaacagaaaccgtggcccttctcaaggctcaaaacatccaacatgtgagactctttgatgccgacagatccatgcttcttgcacttg |
120 |
Q |
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| T |
11210756 |
aacatgccaagtccaacggaaaccgtggcccttctcaaggctcaaaacatccaacatgtgagactctttgatgctgacaaatctatgcttcttgcacttg |
11210657 |
T |
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| Q |
121 |
ccaaaactggaatccaagtaattgtttctgttcctaacgacgagctacttggaatcggtcaatccaatgcaactgccgcgaattgggttgctcgtaatgt |
220 |
Q |
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|||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11210656 |
ccaagaccggaatccaagtaattgtttctgttcctaatgatgagctactcggaatcggtcaatccaatgcaactgccgcaaattgggttgctcgtaatgt |
11210557 |
T |
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| Q |
221 |
catagctcatgtcccttcaaccaacattactgccatcgctgtcggttccgaagtcttaacatcactcccaaatgcagctcctgttctcgtatctgcgcta |
320 |
Q |
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| T |
11210556 |
catagctcatgtcccttcaaccaacattactgccatagctgtcggttccgaagtcttaacatcactcccaaatgcagctcctgttctcgtatccgcacta |
11210457 |
T |
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| Q |
321 |
caattcattcagtctgcacttgttgcagctaatcttgatgatcaaattaaagtatctactccactttctacttccatcatacttgactctttcccacctt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11210456 |
caattcattcagtctgcacttgttgcagctaatcttgatgatcaaattaaagtatctactccactttctacttccatcatactcgactctttcccacctt |
11210357 |
T |
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| Q |
421 |
ctcaagcgtttttcaatcgaacttgggatccagtcatgtctcctttacttaaatttttgcagtcgactggttcttatcttatgctcaatgtatatcctta |
520 |
Q |
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| T |
11210356 |
ctcaagcgtttttcaatcgaacttgggatccggtcatgtctcctttacttaaatttttgcagtcgaccggttcttatcttatgctcaatgtatatcctta |
11210257 |
T |
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| Q |
521 |
ttatgattacatgcaatccaacgatgtaatccc |
553 |
Q |
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| T |
11210256 |
ttatgattacatgcaatccaatgatgtaatccc |
11210224 |
T |
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