View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_high_4 (Length: 527)
Name: NF10281_high_4
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 8417597 - 8417987
Alignment:
| Q |
8 |
aagcagagacttggttccattccggattcgatctcttatcaagatgttttgttcttcctttatagtttcctagcctcacttcaacataaggatcacatgt |
107 |
Q |
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| T |
8417597 |
aagcatagacttggttccattccggattcgatctcttatcaagatgttttgttcttcctttatagtttcctagcctcacttcaacataaggatcacatgt |
8417696 |
T |
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| Q |
108 |
tgaagtgagactgttcaaggtgagattcttcgctttcacgactcggacataaagataaaacatctgctcaacaaggtcataggtacttgttgatctttca |
207 |
Q |
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| T |
8417697 |
tgaagtgagactgttcaaggtgagattcttcgctttcacgactcggacataaagataaaacatctgctcaacaaggtcataggtacttgttgatctttca |
8417796 |
T |
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| Q |
208 |
ccaccactcatccatcctcttccattataatttccaccatttggccaccgttcgccgagttgtggacttgtgtctctcacattatagtcctcttcatgat |
307 |
Q |
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| T |
8417797 |
ccaccactcatccatcctcttccattataatttccaccatttggccaccgttcgccgagttgtggacttgtgtctctcacattatagtcctcttcatgat |
8417896 |
T |
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| Q |
308 |
gactattaggatggccttgttgaacttgagggttaattgcgtgcattgtcattggattattacctcttggtcttctctttattgacatcat |
398 |
Q |
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| T |
8417897 |
gactatttggatggccttgttgaacttgagggttaattgcgtgcattgtcattggattattacctcttggtcttctctttattgacatcat |
8417987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 8418106 - 8418181
Alignment:
| Q |
401 |
cgacgatgtttcagccgggaataagcctccttcctctcgtggtggatcgagatttcagtagtttggttatatccaaaagg |
480 |
Q |
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| T |
8418106 |
cgacgatatttcagccgagaataggcctcgt----ctcgtggtggatcgagatttcagtagtttggttatatccaaaagg |
8418181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 7916843 - 7917064
Alignment:
| Q |
16 |
acttggttccattccggattcgatctcttatcaagatgttttgttcttcctttatagtttcctagcctcacttcaacataaggatcacatgttgaagtga |
115 |
Q |
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| T |
7916843 |
acttggttccactctggattcaatttcttctccaaatgctttgttcttcctctatagttccctagctttacttccacataaggatcacagcttgaagt-- |
7916940 |
T |
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| Q |
116 |
gactgttcaaggtg--agattcttcgctttcacgactcggacataaagataaaacatctgctcaacaaggtcataggtacttgttgatctttcaccacca |
213 |
Q |
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| T |
7916941 |
gattgttcctggaggaagatcctttgctttcactacgcgaacgtagagataaaacatctgttcaacaaggtcatgtgtgctggtgagtctttcaccacta |
7917040 |
T |
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| Q |
214 |
ctcatccatcctcttccattataa |
237 |
Q |
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||| ||||| |||||||| |||| |
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| T |
7917041 |
ctcgtccattttcttccatcataa |
7917064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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