View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_high_6 (Length: 475)
Name: NF10281_high_6
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 24648697 - 24648256
Alignment:
| Q |
16 |
cttcccaactactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648697 |
cttcccaactactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatc |
24648598 |
T |
|
| Q |
116 |
aactcattcgttttagtggttactttattctgtcactctaactgcattgaattggcgtatcaactctcatgtcgtacactagacttcttccttcctaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648597 |
aactcattcgttttagtggttactttattctgtcactctaactgcattgaattggcgtatcaactctcatgtcgtacactagacttcttccttcctaaac |
24648498 |
T |
|
| Q |
216 |
attcaaatgctgctattgctcctcagcctccaaatttggaactagcagctcaagtgtaaccttcatgtgcatggcttggtttagttcatatcttgcattt |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648497 |
attcaaatgctgctattgctcctcagcctccaaatttggaactagcagctcaagtgtaaccttcatgtgcatggcttggtttagttcatatcttgcattt |
24648398 |
T |
|
| Q |
316 |
atgtttcttcctatttgttgtttagtagtagtatatttgtaactgttcatccaaatagagcaacctaaaggaacatagggcatgatcagtcgggttggtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648397 |
atgtttcttcctatttgttgtttagtagtagtatatttgtaactgttcatccaaatagagcaacctaaaggaacatagggcatgatcagtcgggttggtt |
24648298 |
T |
|
| Q |
416 |
tttattactttccttaaaaatggaatgcaattatgttttcat |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648297 |
tttattactttccttaaaaatggaatgcaattatgttttcat |
24648256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 24733370 - 24733560
Alignment:
| Q |
24 |
ctactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcatt |
123 |
Q |
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||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
24733370 |
ctactatatatatctttcacatttctggtgttgttggggtcgacacacttttgtggattatcctctctcagttttcgaattggtgtatcatcaactcatt |
24733469 |
T |
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| Q |
124 |
cgttttagtggttactttattctgtcactctaactgcattgaattggcgtatcaactctcatgtcgtacactagacttcttccttcctaaacattc |
219 |
Q |
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| T |
24733470 |
cgttttagtggttactttagtctgccacaccaactgcatcgaattggtgta-----tctaacgtcctacactagacctcttccttcctaaacattc |
24733560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 24693291 - 24693110
Alignment:
| Q |
24 |
ctactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcatt |
123 |
Q |
| |
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||||||||||||||||||| | || ||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
24693291 |
ctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcatt |
24693192 |
T |
|
| Q |
124 |
cgttttagtggttactttattctgtcactctaactgcattgaattggcgtatcaactctcatgtcgtacactagacttcttc |
205 |
Q |
| |
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| |||||||||||||||| |||||||| | |||||||| | |||| || |||| ||||| |||||||||||| ||||| |
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| T |
24693191 |
cattttagtggttacttttgtctgtcacaccaactgcatcaagttggttcataaactttcatgccgtacactagacctcttc |
24693110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 24641922 - 24641721
Alignment:
| Q |
24 |
ctactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcatt |
123 |
Q |
| |
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||||||||||||||||||| | || ||||||||||| || |||||||||||||| ||| | |||||| ||||||||||||||||| |||||||||| |
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| T |
24641922 |
ctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggataatcctttctcagatctcgaattggtgtatcgtcaactcatt |
24641823 |
T |
|
| Q |
124 |
cgttttagtggttactttattctgtcactctaactgcattgaattggcgtatcaactctcatgtcgtacactaga---cttcttccttcctaaacattca |
220 |
Q |
| |
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| |||||||||||||||| |||||||| | |||||||| | |||| || |||| ||||| | ||||||||| |||||||||| ||||||||||| |
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| T |
24641822 |
cattttagtggttacttttctctgtcacaccaactgcatcaagttggttcataaactttcatgccatacactagacctcttcttcctttctaaacattca |
24641723 |
T |
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| Q |
221 |
aa |
222 |
Q |
| |
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|| |
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| T |
24641722 |
aa |
24641721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 18157722 - 18157911
Alignment:
| Q |
71 |
cttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcgttttagtggttactttattctgtcactctaactgcattgaattgg |
170 |
Q |
| |
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||||||| ||| ||| |||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||| ||| | |||||||||||||| | |
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| T |
18157722 |
cttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcattgaattag |
18157821 |
T |
|
| Q |
171 |
cgtatcaactctcatgtcgtacactagacttcttccttcctaaacattcaaa---tgctgctattgctcctcagcctccaaatttggaac |
257 |
Q |
| |
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|| | ||| |||| |||||| ||||||| |||||| | ||| || |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
18157822 |
tgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaac |
18157911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 24733616 - 24733674
Alignment:
| Q |
288 |
ggcttggtttagttcatatcttgcatttatgtttcttcct-atttgttgtttagtagta |
345 |
Q |
| |
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||||||| |||||| |||| ||||||||| |||||||||| |||||||||||| ||||| |
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| T |
24733616 |
ggcttggcttagttgatattttgcatttacgtttcttcctaatttgttgtttaatagta |
24733674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 15282110 - 15282299
Alignment:
| Q |
71 |
cttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcgttttagtggttactttattctgtcactctaactgcattgaattgg |
170 |
Q |
| |
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||||||| ||| ||| |||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||| ||| | |||||||||||||| | |
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| T |
15282110 |
cttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcattgaattag |
15282209 |
T |
|
| Q |
171 |
cgtatcaactctcatgtcgtacactagacttcttccttcctaaacattcaaa---tgctgctattgctcctcagcctccaaatttggaac |
257 |
Q |
| |
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|| | ||| |||| |||||| ||||||| |||||| | ||| || |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
15282210 |
tgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaac |
15282299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 24223608 - 24223797
Alignment:
| Q |
71 |
cttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcgttttagtggttactttattctgtcactctaactgcattgaattgg |
170 |
Q |
| |
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||||||| ||| ||| |||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||| ||| | |||||||||||||| | |
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| T |
24223608 |
cttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcattgaattag |
24223707 |
T |
|
| Q |
171 |
cgtatcaactctcatgtcgtacactagacttcttccttcctaaacattcaaa---tgctgctattgctcctcagcctccaaatttggaac |
257 |
Q |
| |
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|| | ||| |||| |||||| ||||||| |||||| | ||| || |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
24223708 |
tgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaac |
24223797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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