View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_1 (Length: 843)
Name: NF10281_low_1
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 357 - 712
Target Start/End: Complemental strand, 30767240 - 30766885
Alignment:
| Q |
357 |
ctgcatacatatgtatgaatgtatctaattcttgggttatagtccttactgtttgatgaatgctgataataacacagttcatttgataactggagaagtg |
456 |
Q |
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| T |
30767240 |
ctgcatacatacgtatgaatgtatctaattcttggattatagtccttactgtttgatgaatgctgataataacacagttcatttgataactggtgaagtg |
30767141 |
T |
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| Q |
457 |
aaaaccataagttattataccatgtcggtccatggtgaatcatgcttcagaaaaaatagaatatagtaagatttagaatatttttctccaatattagaaa |
556 |
Q |
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| T |
30767140 |
aaaaccataagttattataccatgtcggtccatggtgaatcatgcttcagaaaaaatagaatatagtaagatttagaatatttttctccaatattagaaa |
30767041 |
T |
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| Q |
557 |
agaataaggttttttattttacaatccaacgaaaaaagttgatatgttcagttttggttattttttatataatttttcaactttgttaccgtggtttgaa |
656 |
Q |
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| T |
30767040 |
agaataaggttttttattttacaatccaacgaaaaaagttgatatgttcagttttggttattttttatataatttttcaactttgttaccgtggtttgca |
30766941 |
T |
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| Q |
657 |
ttagattggatatgctaatacgattatatttttaatggttaggtcggtcggaagtc |
712 |
Q |
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| T |
30766940 |
ttagattggatatgctaatacgattatatttgtaatggttaggtcggtcggaagtc |
30766885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 30767583 - 30767317
Alignment:
| Q |
18 |
agaagagggtcatagagtttcttctaatagaccttcttcttctcctaatcacaactgagcaaagttttctatcaggtattattccactgataatattagc |
117 |
Q |
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| T |
30767583 |
agaagagggtcatagagtttcttctaatagaccttcttcttctcctaatcacaactgagcaaagttttctatcaggtattattccactgataatattagc |
30767484 |
T |
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| Q |
118 |
ataaagttgtaatcttttatatatctttagctttatggaacaaatgaataaaactcagcaaaat---tattctcccactccttgttcctttttaaatttc |
214 |
Q |
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| T |
30767483 |
ataaagttgtaatcttttatatatctttagctttatggaacaaatgaataaaactcagcaaaattattattctcccactccttgttcctttttaaatttc |
30767384 |
T |
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| Q |
215 |
tttcatgcatcttatta-atggatggatcattctctatcaagattaatggacattggacacattctt |
280 |
Q |
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| T |
30767383 |
tttcatgcatcttattatatggatggatcattctctatcaagattaatggacattggacacattctt |
30767317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 714 - 836
Target Start/End: Complemental strand, 30766846 - 30766724
Alignment:
| Q |
714 |
tcaatgataaattgacatttcgtctatctactaaaaaatatgatcgacatttctatgcattttggcattgtgaacttatgataaaatatgtttagtggtt |
813 |
Q |
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| T |
30766846 |
tcaatggtaaattgatatttcgtctatctactaaaaaattggattgacatttctttgcattttggcattgtgaacttatgataaaatatgtttagtggtt |
30766747 |
T |
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| Q |
814 |
tgttagatttgtctctgcttctc |
836 |
Q |
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| T |
30766746 |
tgttagatttgtctctgattctc |
30766724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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