View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10281_low_10 (Length: 358)
Name: NF10281_low_10
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 5377173 - 5377507
Alignment:
| Q |
17 |
caaacaaatcgtgcagtcacatatgaacaaacttgtggaataatatttgtgaatgacaaaaaatgggtacaattnnnnnnnngtaagatctttctgtcga |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
5377173 |
caaacaaatcgtgcagtcacatacgaacaaacttgtggaataatatttgtgaatgacaaaaaatgggtacaattaaaaaaaagtaagatctttatgtcga |
5377272 |
T |
|
| Q |
117 |
taatcaaaggatatatgtcattctttatccaagaaaatgcaatttcaatccactttaatttgaaaattagggaatcaggacaaatgtatatacactacaa |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5377273 |
taatcaaaggatatatttcattctttatccaagaaaatgcaatttcaatccactttaatttgaaaattagggaatcaggacaaatgtatatacactacaa |
5377372 |
T |
|
| Q |
217 |
catgattcggacaaattgcaagtgcacacacctttctgcaacatgcaaaacattatgtgcatggatctttaaatgacatcgtatttaacatcaaagatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5377373 |
catgattcggacaaattgcaagtgcacacacctttctgcaacatgcaaaacattatgtgcatggatctttaaatgacatcgtatttaacatcaaagatgt |
5377472 |
T |
|
| Q |
317 |
tcaacttttctcatcggtgacatgtgttcttctct |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5377473 |
tcaacttttctcatcggtgacatgtgttcttctct |
5377507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University