View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_11 (Length: 351)
Name: NF10281_low_11
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 47678919 - 47679250
Alignment:
| Q |
1 |
attacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaatgcttga |
100 |
Q |
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| T |
47678919 |
attacagattttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaatgcttga |
47679018 |
T |
|
| Q |
101 |
actaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatgaaaatgatcggtcatcgaagatcgattgtcgtacatatcta |
200 |
Q |
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| T |
47679019 |
actaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatcaaaatgattggtcatcgaagatcgattgtcgttcatatcta |
47679118 |
T |
|
| Q |
201 |
atgattgagcataattattttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagatgtgtttagttttggt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47679119 |
atgattgagcataattgttttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagatgtgtttagttttggt |
47679218 |
T |
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| Q |
301 |
gtaatcattttagaaattgtatgtggccagag |
332 |
Q |
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| T |
47679219 |
gtaataattttagaaattgtatgtggccagag |
47679250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 47690457 - 47690573
Alignment:
| Q |
212 |
taattattttgtgatacagtggatacatggctccggagtacattagacatggacaattctcagttaagtcagatgtgtttagttttggtgtaatcatttt |
311 |
Q |
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| T |
47690457 |
taattgttttgacatacagcggatacatggctccagagtacattaaacatggagaattttcgatcaagtcagatgtgttcagttttggtgtaattatttt |
47690556 |
T |
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| Q |
312 |
agaaattgtatgtggcc |
328 |
Q |
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||||||||| ||||||| |
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| T |
47690557 |
agaaattgtttgtggcc |
47690573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47690203 - 47690306
Alignment:
| Q |
1 |
attacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaatgcttga |
100 |
Q |
| |
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|||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| | | |||||||| || |
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| T |
47690203 |
attacagattttggcattgcaaaattgtttgatgccaatcaaactcatggcatgacaagcaccgttattggaacttagtaagtacttaagaaatgctaga |
47690302 |
T |
|
| Q |
101 |
acta |
104 |
Q |
| |
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|||| |
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| T |
47690303 |
acta |
47690306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 6525563 - 6525607
Alignment:
| Q |
259 |
catggacaattctcagttaagtcagatgtgtttagttttggtgta |
303 |
Q |
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| T |
6525563 |
catggacaattttcagtgaagtcagatgtatttagttttggtgta |
6525607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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