View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_12 (Length: 346)
Name: NF10281_low_12
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 8841440 - 8841762
Alignment:
| Q |
14 |
caaagggcccatgacaaatccactacctacaccaagaagtccacctaaaattccagctagcaaggaacaagaaagtgatagagctagaagatgcaaaggc |
113 |
Q |
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| T |
8841440 |
caaagggcccatgacaaatccactacctacaccaagaagtccacctaaaattccagctagcaaggaacaagaaagtgatagagctagaagatgcaaaggc |
8841539 |
T |
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| Q |
114 |
caatgtgtgccatgatcttgtttggaaatagtaatcttcttcccttgatataggcctgttgcttggtatagagaaacccctacagtaactggtatctata |
213 |
Q |
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| T |
8841540 |
caatgtgtgccatgatcttgtttggaaatagtgatcttcttcccttgatataggcctgttgcttggtatagagaaacccctacagtaactggtatctata |
8841639 |
T |
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| Q |
214 |
aaacaaaatttaattactaaagttgtagggatcaaattaagtcacattatttgacacagtaaaagaaagtgtacacagttacctgtaagaaagtaaatat |
313 |
Q |
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| T |
8841640 |
aaacaaaatttaattactaaatttgtaag----taatt--gtaa----atttgacacagtaaaagaaagtgtacacagttacctgtaagaaagtaaatat |
8841729 |
T |
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| Q |
314 |
ccagaatgtgattgaacatctagttgtataatt |
346 |
Q |
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| T |
8841730 |
ccagaatgtgattgaacatctagttgtataatt |
8841762 |
T |
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