View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_16 (Length: 322)
Name: NF10281_low_16
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 31 - 304
Target Start/End: Complemental strand, 50110388 - 50110115
Alignment:
| Q |
31 |
ttggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagat |
130 |
Q |
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| T |
50110388 |
ttggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagat |
50110289 |
T |
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| Q |
131 |
atatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactact |
230 |
Q |
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| T |
50110288 |
atatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactact |
50110189 |
T |
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| Q |
231 |
ctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataag |
304 |
Q |
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| T |
50110188 |
ctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataag |
50110115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 50120254 - 50120105
Alignment:
| Q |
155 |
actgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagt |
254 |
Q |
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| T |
50120254 |
actgaagagctttgtaataggtggattgaagttggtgctttctatcctttctcgagggatcattcaagtgtcatttcccctagacaagaactttaccaat |
50120155 |
T |
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| Q |
255 |
gggagacggtagccgaatcagctagaaatgcattggggatgaggtataag |
304 |
Q |
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| T |
50120154 |
gggagtcagtagctgaatcagctagaaatgccttggggatgaggtataag |
50120105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 50120405 - 50120288
Alignment:
| Q |
31 |
ttggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagat |
130 |
Q |
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||||||||||||||| | || ||||||||| | || ||||| | |||||||| || || || |||||||||||||| ||||||||||||| ||||| |
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| T |
50120405 |
ttggacaggtgacaacaaaggaacatgggaggatttaagatatactatatctaccatcctcaactttggaatatttggcatgccaatggttggggcagat |
50120306 |
T |
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| Q |
131 |
atatgtggtttctatcca |
148 |
Q |
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| T |
50120305 |
atatgtggtttctatcca |
50120288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 285
Target Start/End: Original strand, 23934414 - 23934668
Alignment:
| Q |
31 |
ttggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagat |
130 |
Q |
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|||||| ||||||||||| || ||||||||||| || || || |||||||| || ||| ||||||| || ||||||||||| |||||||||||||| || |
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| T |
23934414 |
ttggaccggtgacaatcaaggaacatgggagaatttaaggtattcaatatccacaatgttgaatttcggtatatttggtgttccaatggttggttctgac |
23934513 |
T |
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| Q |
131 |
atatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactact |
230 |
Q |
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|||||||| || || |||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
23934514 |
atatgtggattttacccacaaccaactgaagaactatgcaatagatggattgaagttggtgctttctacccattttcaagagatcatgcaaactactact |
23934613 |
T |
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| Q |
231 |
ctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgc |
285 |
Q |
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| || |||||||| |||||||| ||||| | ||||| ||||||| |||||||| |
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| T |
23934614 |
ccccgagacaagagctttaccaatgggattcagtagctcaatcagcaagaaatgc |
23934668 |
T |
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