View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_17 (Length: 319)
Name: NF10281_low_17
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_17 |
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| [»] scaffold0700 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 36746964 - 36747269
Alignment:
| Q |
1 |
tgaaataaagacattgacaggttaatctcgactgtgatggttgaatctcgtcacacctttctcctccgttctcgatcagccatattcctccaatcaactt |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
36746964 |
tgaaataaagaaattgacaggttaatctcgactgcgatggttgaatctcatcacacctttctcctccgttctcgatcagctacattcctccaatcaactt |
36747063 |
T |
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| Q |
101 |
gtctccacaattattttggggtctgtttgcttaagatatgaaatgacatattcttagggtttgattgacaagacacatttttgagcttagcttatgtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36747064 |
gtctccacaattattttggggtctgtttgcttaagatatgaaatgacatattattagggtttgattgacaagacacatttttgagcttagcttatgtctt |
36747163 |
T |
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| Q |
201 |
cctcggactnnnnnnncatcaaaatttaaaatcattagaaatcatttatcatttgtaatgatttttaattaatgtcaaattttatagaaatgatatatgt |
300 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36747164 |
cctcggactaaaaaaacatcaaaattaaaaatcattagaaatcatttatcatttgtaatgatttttaattaatatcaaattttatagaaatgatatatgt |
36747263 |
T |
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| Q |
301 |
tataat |
306 |
Q |
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|||||| |
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| T |
36747264 |
tataat |
36747269 |
T |
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Target: scaffold0700 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0700
Description:
Target: scaffold0700; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 5219 - 5174
Alignment:
| Q |
261 |
atttttaattaatgtcaaattttatagaaatgatatatgttataat |
306 |
Q |
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| T |
5219 |
attttttattaatgtcaaactttatagacatgatctatgttataat |
5174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 3920769 - 3920818
Alignment:
| Q |
257 |
aatgatttttaattaatgtcaaattttatagaaatgatatatgttataat |
306 |
Q |
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| T |
3920769 |
aatgatttttaattaatgtcaaatgtaatagatatgatctatattataat |
3920818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 29142023 - 29141994
Alignment:
| Q |
257 |
aatgatttttaattaatgtcaaattttata |
286 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29142023 |
aatgatttttaattaatgtcaaattttata |
29141994 |
T |
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