View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10281_low_18 (Length: 287)

Name: NF10281_low_18
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10281_low_18
NF10281_low_18
[»] chr3 (3 HSPs)
chr3 (19-111)||(53553625-53553717)
chr3 (20-100)||(1259279-1259359)
chr3 (20-100)||(37242567-37242647)
[»] chr5 (2 HSPs)
chr5 (20-86)||(36989048-36989114)
chr5 (41-86)||(40296118-40296163)
[»] chr2 (4 HSPs)
chr2 (19-88)||(11272548-11272617)
chr2 (20-94)||(33858646-33858720)
chr2 (19-86)||(13016050-13016117)
chr2 (19-65)||(1479466-1479512)
[»] chr1 (1 HSPs)
chr1 (19-86)||(32774127-32774194)
[»] chr8 (6 HSPs)
chr8 (19-100)||(9936414-9936495)
chr8 (19-74)||(8273854-8273909)
chr8 (19-66)||(42941258-42941305)
chr8 (20-66)||(36404084-36404130)
chr8 (20-66)||(37269863-37269909)
chr8 (22-70)||(30503004-30503052)
[»] chr7 (3 HSPs)
chr7 (19-100)||(42460087-42460168)
chr7 (20-87)||(31234744-31234811)
chr7 (20-81)||(21245198-21245259)
[»] chr6 (4 HSPs)
chr6 (20-100)||(18246532-18246612)
chr6 (19-100)||(1034317-1034399)
chr6 (19-93)||(2920929-2921003)
chr6 (20-69)||(10232781-10232830)
[»] chr4 (1 HSPs)
chr4 (20-100)||(16989625-16989705)
[»] scaffold0760 (1 HSPs)
scaffold0760 (20-66)||(1742-1788)
[»] scaffold0495 (1 HSPs)
scaffold0495 (20-69)||(9504-9553)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 53553717 - 53553625
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggcttttggatatgctat 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||  |||||||| ||||||    
T  53553717 aaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctgctat 53553625  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1259359 - 1259279
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||  ||||| |||||    
T  1259359 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttt 1259279  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 37242647 - 37242567
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||  ||||| |||||    
T  37242647 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttt 37242567  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 36989048 - 36989114
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 86  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  36989048 aagatagcttctttcctcttctataagtggacgtggaatcctagagagtgtctaacaaggagatgaa 36989114  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  41 tatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 86  Q
    |||||||||||||||||||||| |||||| ||||| || |||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 11272548 - 11272617
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacg 88  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| || |||||||||    
T  11272548 aaagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacg 11272617  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33858720 - 33858646
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctg 94  Q
    |||| |||||| |||||||| ||||||||||||||||||||| |||| || ||||| || ||||||||| |||||    
T  33858720 aagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaacgtggctg 33858646  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 13016117 - 13016050
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 86  Q
    ||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| || || |||||||    
T  13016117 aaagataacctcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaa 13016050  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1479512 - 1479466
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagag 65  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||    
T  1479512 aaagatagcatcgttcctcttttatgagtggacttggaatcctagag 1479466  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 32774194 - 32774127
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 86  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| || |||||||    
T  32774194 aaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 9936414 - 9936495
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||| |||||||||| || ||||||| || ||||||||||    
T  9936414 aaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaaaggtgctggctttt 9936495  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 8273854 - 8273909
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaa 74  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  8273854 aaagatagcttctttcctcttttatgagtggatttggaatcctagagagtgtctaa 8273909  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 42941258 - 42941305
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagaga 66  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  42941258 aaagatagcttccttcctcttttatgagtggacttggaatcctagaga 42941305  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 36404130 - 36404084
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagaga 66  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  36404130 aagatagcttccttcctcttctacgagtggacttggaatcctagaga 36404084  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 37269909 - 37269863
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagaga 66  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  37269909 aagatagcttccttcctcttttatgagtggacttggaatcctagaga 37269863  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 30503052 - 30503004
Alignment:
Q  22 gatagcttctttcctcttctatgagtggacttggaatcctagagagtgc 70  Q
    ||||||||||| ||||||||| ||||||  ||||||||| |||||||||    
T  30503052 gatagcttcttacctcttctacgagtggtgttggaatccgagagagtgc 30503004  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 42460168 - 42460087
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    ||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||| || ||||||| || |||| |||||    
T  42460168 aaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaaaggtgctgcctttt 42460087  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 31234811 - 31234744
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaac 87  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| || ||||| || ||||||||    
T  31234811 aagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 21245259 - 21245198
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggag 81  Q
    ||||| |||||||  || |||||||||||| | ||||||||||||||||||||||| |||||    
T  21245259 aagattgcttcttgtctattctatgagtggtcgtggaatcctagagagtgcctaaagaggag 21245198  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 18246612 - 18246532
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||| |||||    
T  18246612 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttt 18246532  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 1034317 - 1034399
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaa-aaggagatgaacggggctggctttt 100  Q
    ||||||||| || |||||||| |||||||||||||||||||||| |||||||||||| | ||||||||| || |||| |||||    
T  1034317 aaagatagcatcgttcctcttttatgagtggacttggaatcctaaagagtgcctaaatagggagatgaaaggtgctgtctttt 1034399  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 2921003 - 2920929
Alignment:
Q  19 aaagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggct 93  Q
    ||||||||||||||||||||| ||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||    
T  2921003 aaagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggct 2920929  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10232781 - 10232830
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtg 69  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||||||    
T  10232781 aagatagcttctttcctcttttatgagtggatttggaatcttaaagagtg 10232830  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 16989625 - 16989705
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||| |||||    
T  16989625 aagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttt 16989705  T

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Target: scaffold0760 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 1788 - 1742
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagaga 66  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  1788 aagatagcttccttcctcttttatgagtggacttggaatcctagaga 1742  T

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Target: scaffold0495 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 9504 - 9553
Alignment:
Q  20 aagatagcttctttcctcttctatgagtggacttggaatcctagagagtg 69  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||||||    
T  9504 aagatagcttctttcctcttttatgagtggatttggaatcttaaagagtg 9553  T

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