View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_23 (Length: 243)
Name: NF10281_low_23
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5439704 - 5439468
Alignment:
| Q |
1 |
aatctatctaatataaatttcaattatgctgcgaannnnnnngtgcaaattgaaaaatatggagtaaacttttaaaaccacaactatgcacacacnnnnn |
100 |
Q |
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| T |
5439704 |
aatctatctaatataaatttcaattatgcggcgaatttttttgtgcaaattgaaaaatatggagtaaacttttaaaaccacaactatgcacacacaaaaa |
5439605 |
T |
|
| Q |
101 |
nn-------------catgcaaaatgccataggtataccctcgatgtgttaaaatgaacttgaacnnnnnnntaaaatcatatcacgttgatattatgga |
187 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5439604 |
aaaaacaaaaaaaaacatgcaaaatgtcataggtataccctcgatgtgttaaaatgaacttgaacaaaaaaataaaatcatatcacgttgatattatgga |
5439505 |
T |
|
| Q |
188 |
ctaaaacttcaccatttactttttaggtataccctcg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
5439504 |
ctaaaacttcaccatttactttttaggtataccctcg |
5439468 |
T |
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