View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_28 (Length: 205)
Name: NF10281_low_28
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 17461666 - 17461481
Alignment:
| Q |
19 |
ggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgataca |
118 |
Q |
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| T |
17461666 |
ggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgataca |
17461567 |
T |
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| Q |
119 |
gcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagagccattgttacaatggtaaatat |
204 |
Q |
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| T |
17461566 |
gcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtgccatggttgcaatggtaaatat |
17461481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 17455422 - 17455544
Alignment:
| Q |
83 |
tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagag |
182 |
Q |
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| T |
17455422 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg |
17455521 |
T |
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| Q |
183 |
ccattgttacaatggtaaatatt |
205 |
Q |
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| T |
17455522 |
ccattgttacaatggtaaatatt |
17455544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 52143036 - 52142914
Alignment:
| Q |
82 |
ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcaga |
181 |
Q |
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| T |
52143036 |
ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagt |
52142937 |
T |
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| Q |
182 |
gccattgttacaatggtaaatat |
204 |
Q |
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| T |
52142936 |
gccatggttgcaatggtaaatat |
52142914 |
T |
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