View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10281_low_3 (Length: 658)

Name: NF10281_low_3
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10281_low_3
NF10281_low_3
[»] chr5 (25 HSPs)
chr5 (19-645)||(41286351-41286983)
chr5 (477-636)||(41316351-41316510)
chr5 (19-145)||(41324755-41324881)
chr5 (467-636)||(31188371-31188540)
chr5 (481-633)||(41328321-41328473)
chr5 (18-117)||(31225598-31225697)
chr5 (478-636)||(41310611-41310769)
chr5 (478-636)||(41324420-41324578)
chr5 (481-635)||(41332332-41332486)
chr5 (531-636)||(31225273-31225378)
chr5 (21-145)||(41328732-41328856)
chr5 (484-592)||(41337304-41337412)
chr5 (19-137)||(41337480-41337598)
chr5 (18-106)||(31188081-31188169)
chr5 (33-145)||(41332665-41332777)
chr5 (19-89)||(14235867-14235937)
chr5 (19-129)||(41431922-41432032)
chr5 (19-145)||(41316691-41316817)
chr5 (18-107)||(31178018-31178107)
chr5 (543-636)||(31178402-31178495)
chr5 (478-636)||(41366511-41366666)
chr5 (19-91)||(41366898-41366970)
chr5 (19-70)||(41310967-41311018)
chr5 (94-145)||(41310916-41310967)
chr5 (395-462)||(4209918-4209986)
[»] chr4 (2 HSPs)
chr4 (19-130)||(17248899-17249010)
chr4 (478-590)||(17249070-17249182)
[»] chr6 (3 HSPs)
chr6 (267-413)||(2401881-2402029)
chr6 (395-460)||(2401804-2401870)
chr6 (395-458)||(17545311-17545375)
[»] chr7 (3 HSPs)
chr7 (281-362)||(42424446-42424528)
chr7 (268-315)||(42424192-42424239)
chr7 (395-455)||(42424577-42424638)
[»] chr1 (1 HSPs)
chr1 (288-367)||(43473281-43473360)
[»] chr8 (2 HSPs)
chr8 (288-413)||(5021746-5021862)
chr8 (389-461)||(35213373-35213446)
[»] chr3 (3 HSPs)
chr3 (273-382)||(8895911-8896019)
chr3 (391-462)||(31311326-31311398)
chr3 (397-457)||(55378742-55378803)
[»] chr2 (1 HSPs)
chr2 (395-460)||(27277547-27277613)


Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 19 - 645
Target Start/End: Complemental strand, 41286983 - 41286351
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41286983 ttcttacctcagcttgtgctt-ttccatcacctttggattctttaccatctcagacatccctcataacacagcccctgacgatgtttcgccaccagcagt 41286885  T
Q  119 gaacaagtcctgtaaatggattaacataatttatcatctaaccc----ccttccacacatcacagctaaaaaataagttataatttttatattctctcca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286884 gaacaagtcctgtaaatggattaacataatttatcatctaacccacacccttccacacatcacagctaaaaaataagttataatttttatattctctcca 41286785  T
Q  215 aatacaatgattagttaagataatattattttt---cttcttcaggaaatctttaaaaaagtccacgtcagcaaagtaaaaatccatgtggcagtgccac 311  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41286784 aatacaatgattagttaagataatattatttttgatcttcttcaggaaatctttaaaaaaatccacgtcagcaaagtaaaaatccatgtggcagtgccac 41286685  T
Q  312 atcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaatagcagggaccaattccatagatggagaattttagggggactaa 411  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  41286684 gtcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaacagcagggaccaattccatagatggagaattttaggaggactaa 41286585  T
Q  412 aatcaatagtatgtatatttaggggatcaaaaacataattaaccctaaaattattaacatggttagttgtagactaacctggatgactgcttttaaatta 511  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286584 aatcaatagtatgtatatttaggggatcaaaagcataattaaccctaaaattattaacatggttagttgtagactaacctggatgactgcttttaaatta 41286485  T
Q  512 tcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactagatcttcatctttgctttcttccatgtgacttcttt 611  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  41286484 tcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttcatctttgctttcttccatgtgacttcttt 41286385  T
Q  612 tatgatcatcaatgatgtcttgcaagtttggtct 645  Q
    |||||||||||||||||||| |||||||||||||    
T  41286384 tatgatcatcaatgatgtctggcaagtttggtct 41286351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 477 - 636
Target Start/End: Complemental strand, 41316510 - 41316351
Alignment:
Q  477 gttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactag 576  Q
    ||||| ||||||||||||||| || ||||| ||| |||||||| || |||||||||||||| | | |||||||||||||||||||||||||||  |||||    
T  41316510 gttgtggactaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactag 41316411  T
Q  577 atcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
    ||||||||| |||||||||||| ||||| | ||||| ||||| || ||||||||||||||    
T  41316410 atcttcatcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaa 41316351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 41324881 - 41324755
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |  |||||||||||||  |||||||      
T  41324881 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagatatcgcccataacacagtcgttgacgatgtttcggtaccagcatc 41324782  T
Q  119 gaacaagtcctgtaaatggattaacat 145  Q
    ||| | |||||  ||||||||||||||    
T  41324781 gaatatgtcctacaaatggattaacat 41324755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 467 - 636
Target Start/End: Original strand, 31188371 - 31188540
Alignment:
Q  467 aacatggttagttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaa 566  Q
    |||||| || ||||||||| |||| | |||| |||||| | ||| | |||||| || ||||  |||||||| ||| |||||||||||||||||||||||     
T  31188371 aacatgtttggttgtagacgaaccagaatgattgctttcatattgttatcagttaatggattatgtgagtgatcattttcctgttgaatcttgagaagag 31188470  T
Q  567 catgaactagatcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
     || ||||||||||||||| |||||||||||| ||||| |  ||||||||||| | ||||| ||||||||    
T  31188471 tatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatatcttgcaa 31188540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 481 - 633
Target Start/End: Complemental strand, 41328473 - 41328321
Alignment:
Q  481 tagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactagatct 580  Q
    ||||||||||||||||| || ||| | ||| ||||| || || ||||||| |||||| | | |||||||||||||||||||||||||||  |||||||||    
T  41328473 tagactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatct 41328374  T
Q  581 tcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttg 633  Q
    ||||| |||||| ||||| ||||| | ||| | ||||| || |||||||||||    
T  41328373 tcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttg 41328321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 31225697 - 31225598
Alignment:
Q  18 tttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcag 117  Q
    |||||||| |||||||||||||| ||||| | |||||| ||||||||||||||||| ||||||||||||||| ||||||| || ||||||| ||||||||    
T  31225697 tttcttacttcagcttgtgcttcctccattatctttgggttctttaccatctcagatatcccccataacacaacccctgatgacgtttcgctaccagcag 31225598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 636
Target Start/End: Complemental strand, 41310769 - 41310611
Alignment:
Q  478 ttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactaga 577  Q
    ||||||||| |||||||||| || ||| | ||| ||||| || || ||||||| |||||| | | ||||||||| |||||||||||||||||  ||||||    
T  41310769 ttgtagacttacctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactaga 41310670  T
Q  578 tcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
    |||||||| ||||| |||||| || || | ||||| ||||| || ||||||||||||||    
T  41310669 tcttcatcattgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaa 41310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 636
Target Start/End: Complemental strand, 41324578 - 41324420
Alignment:
Q  478 ttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactaga 577  Q
    |||| ||||||||||||||| ||  |||| ||| ||||| || || |||||||||||||| | | |||||||||||||||||||||||||||  ||||||    
T  41324578 ttgttgactaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactaga 41324479  T
Q  578 tcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
    | ||| || ||||| |||||| ||||| | ||||| ||||| || || |||||||||||    
T  41324478 tattcttcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaa 41324420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 635
Target Start/End: Complemental strand, 41332486 - 41332332
Alignment:
Q  481 tagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactagatct 580  Q
    ||||||||||||||||| || ||| | ||| ||||| || || ||||||| |||||  | | |||||||||||||||||||||||||||  |||||||||    
T  41332486 tagactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatct 41332387  T
Q  581 tcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgca 635  Q
    ||||| |||||| ||||| ||||| | ||| | ||||| || |||||||||||||    
T  41332386 tcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgca 41332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 31225378 - 31225273
Alignment:
Q  531 gtgagtgctcactttcctgttgaatcttgagaagaacatgaactagatcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtc 630  Q
    ||||||||||| |||||||||| ||||||||||||  || ||||||||||||||| |||||||||||| ||||| |  ||||||||||||| ||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  631 ttgcaa 636  Q
    ||||||    
T  31225278 ttgcaa 31225273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 41328856 - 41328732
Alignment:
Q  21 cttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagtga 120  Q
    ||||| ||| |||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||| | ||  |||||||||||||  |||||||  ||    
T  41328856 cttacttcatcttgtgcttcttccattacctttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtttcggtaccagcaagga 41328757  T
Q  121 acaagtcctgtaaatggattaacat 145  Q
    ||| |||||  ||||||||||||||    
T  41328756 acatgtcctacaaatggattaacat 41328732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 484 - 592
Target Start/End: Complemental strand, 41337412 - 41337304
Alignment:
Q  484 actaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactagatcttca 583  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||||||||||  || |||| ||||||| |||||||||||||| |||||| ||||||    
T  41337412 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 41337313  T
Q  584 tctttgctt 592  Q
    || ||||||    
T  41337312 tccttgctt 41337304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 41337598 - 41337480
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    ||||||||||| |||||||||||||||| ||  |||| ||||||| |||||| |||||| |||||| ||||   ||||||||||||||||  |||||| |    
T  41337598 ttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaat 41337499  T
Q  119 gaacaagtcctgtaaatgg 137  Q
    |||||||||||| ||||||    
T  41337498 gaacaagtcctgcaaatgg 41337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31188081 - 31188169
Alignment:
Q  18 tttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttc 106  Q
    |||||||| |||||||||||||  ||||| | |||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  31188081 tttcttacttcagcttgtgctttctccattatctttgggttctttaccatctcagatatcccccatagcacagccccggacgatgtttc 31188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 41332777 - 41332665
Alignment:
Q  33 tgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagtgaacaagtcctgta 132  Q
    |||||||||||||  |||||||| ||||||||||||||||||||| |||||||||   || ||||||||||||||  ||||||| ||||||  ||||  |    
T  41332777 tgtgcttcttccaatacctttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtttcggtaccagcaatgaacatatcctaca 41332678  T
Q  133 aatggattaacat 145  Q
    |||||||||||||    
T  41332677 aatggattaacat 41332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14235937 - 14235867
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacaca 89  Q
    |||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||| ||||||||    
T  14235937 ttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatccccaataacaca 14235867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 41432032 - 41431922
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    ||||||||||||||||||||||||||||||| || || |||||  |||||||||||||| ||||||| ||| || ||||||| |||||   ||||||||     
T  41432032 ttcttacctcagcttgtgcttcttccatcacattcgggttcttcgccatctcagacatcgcccataagacaaccactgacgaagtttcagtaccagcaga 41431933  T
Q  119 gaacaagtcct 129  Q
     ||||||||||    
T  41431932 aaacaagtcct 41431922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 41316817 - 41316691
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    ||||||| ||||||||||||| |||||| || ||||  || ||||||||| |||||||| |||| | ||||||| |||||||||||||   |||||||      
T  41316817 ttcttacttcagcttgtgcttgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtttcagtaccagcacc 41316718  T
Q  119 gaacaagtcctgtaaatggattaacat 145  Q
     |||| |||||| ||||||||||||||    
T  41316717 aaacatgtcctgcaaatggattaacat 41316691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 31178018 - 31178107
Alignment:
Q  18 tttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcg 107  Q
    |||||||| |||||||||||||| | ||| | |||||| ||||||| ||||||||| ||||||||||||||| | ||||| |||||||||    
T  31178018 tttcttacttcagcttgtgcttccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcg 31178107  T

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Target: chr5; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 543 - 636
Target Start/End: Original strand, 31178402 - 31178495
Alignment:
Q  543 tttcctgttgaatcttgagaagaacatgaactagatcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
    |||||||||||||||||| |||  ||| ||||||||||||||| |||||||||||| ||||| |  ||||||||||||| | ||| ||||||||    
T  31178402 tttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaa 31178495  T

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Target: chr5; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 636
Target Start/End: Complemental strand, 41366666 - 41366511
Alignment:
Q  478 ttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactaga 577  Q
    |||| |||||||||||||||| | ||||| ||| || || |||||||||||||||||||| |   || |  |||||||||||||||||||||  ||||||    
T  41366666 ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctactaga 41366570  T
Q  578 tcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtcttgcaa 636  Q
    || ||||  || ||  ||| | ||||||| ||||| |||||||| ||||| ||||||||    
T  41366569 tcatcattcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaa 41366511  T

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Target: chr5; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 41366970 - 41366898
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagc 91  Q
    ||||||||||| |||||||| ||||||| ||| | ||||||||||||||||||||||||  ||||||||||||    
T  41366970 ttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataacacagc 41366898  T

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Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 41311018 - 41310967
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctc 70  Q
    ||||||| ||| |||||||||||||||| |||||||| ||||||||||||||    
T  41311018 ttcttacttcaacttgtgcttcttccattacctttgggttctttaccatctc 41310967  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 41310967 - 41310916
Alignment:
Q  94 ctgacgatgtttcgccaccagcagtgaacaagtcctgtaaatggattaacat 145  Q
    ||||||||||||||  |||||||||||||| |||||  ||||||||||||||    
T  41310967 ctgacgatgtttcggtaccagcagtgaacatgtcctacaaatggattaacat 41310916  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 4209986 - 4209918
Alignment:
Q  395 aattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaaccctaaaat 462  Q
    |||||||| ||||||||||| || ||| ||||||||||  ||||||||||| ||| |||||||| ||||    
T  4209986 aattttagagggactaaaataaaaagtttgtatatttatagggatcaaaaatatatttaacccttaaat 4209918  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 17248899 - 17249010
Alignment:
Q  19 ttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagacatcccccataacacagcccctgacgatgtttcgccaccagcagt 118  Q
    |||||||||||||||||||| |||||||||||||||| || ||||  ||||||||||| ||||||||||||  ||| ||||||||||||| ||||||||     
T  17248899 ttcttacctcagcttgtgctgcttccatcacctttgggttttttattatctcagacattccccataacacaatcccagacgatgtttcgctaccagcagc 17248998  T
Q  119 gaacaagtcctg 130  Q
     |||| ||||||    
T  17248999 aaacatgtcctg 17249010  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 590
Target Start/End: Original strand, 17249070 - 17249182
Alignment:
Q  478 ttgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttgtgagtgctcactttcctgttgaatcttgagaagaacatgaactaga 577  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| | || ||||| ||  |||||||| ||||||||||||| |||| ||| |||||||    
T  17249070 ttgtagactaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactaga 17249169  T
Q  578 tcttcatctttgc 590  Q
    |||||||| ||||    
T  17249170 tcttcatccttgc 17249182  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 413
Target Start/End: Complemental strand, 2402029 - 2401881
Alignment:
Q  267 aaaaagtccacgtcagcaaagtaaaaa---tccatgtggcagtgccacatcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggag 363  Q
    ||||| |||||||||||||||||||||   | || |||| | |||||| ||||||||||||||||||||| ||| |||  | | || | |||||||| ||    
T  2402029 aaaaattccacgtcagcaaagtaaaaaaaattcacgtgg-actgccacgtcatttggtatgcacatgtggtgttcccatgttagcaacattaaagagaag 2401931  T
Q  364 ttaatagcagggaccaattccatagatggagaattttagggggactaaaa 413  Q
    |||| |||||||||||||| |||| ||| |||||||||| ||||||||||    
T  2401930 ttaacagcagggaccaatttcataaatgaagaattttagagggactaaaa 2401881  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 2401870 - 2401804
Alignment:
Q  395 aattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaaccctaaa 460  Q
    |||||||||||| |||||||||| | |  ||||||||| |||||  |||||||||||||||||||||    
T  2401870 aattttaggggggctaaaatcaacaattggtatatttaaggggacaaaaaacataattaaccctaaa 2401804  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 458
Target Start/End: Original strand, 17545311 - 17545375
Alignment:
Q  395 aattttagggggactaaaatcaatagtatgtatatttag-gggatcaaaaacataattaacccta 458  Q
    |||||||| ||||||||||  || ||| ||||||||||  ||||||||||||||| |||||||||    
T  17545311 aattttagagggactaaaacaaaaagtttgtatatttatagggatcaaaaacatatttaacccta 17545375  T

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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 42424446 - 42424528
Alignment:
Q  281 agcaaagtaaaaatccatgtggcagtgccacatcatttggtatgcacatgtggcgttgccacatcaa-caccgttaaagagga 362  Q
    ||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  42424446 agcaaagtaaaaatccacgtggcaatgccatgtcatttggtatgcacatgtggcgttgccacgtcaagcacctttaaagagga 42424528  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 42424239 - 42424192
Alignment:
Q  268 aaaagtccacgtcagcaaagtaaaaatccatgtggcagtgccacatca 315  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  42424239 aaaattccacgccagcaaagtaaaaatccatgtagcagtgccacatca 42424192  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 455
Target Start/End: Original strand, 42424577 - 42424638
Alignment:
Q  395 aattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaacc 455  Q
    ||||||||| ||||||||||||| |||   |||||||| |||||||||||| ||||||||||    
T  42424577 aattttaggaggactaaaatcaacagttgatatatttagggggatcaaaaatataattaacc 42424638  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 43473281 - 43473360
Alignment:
Q  288 taaaaatccatgtggcagtgccacatcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaa 367  Q
    |||||||||| || ||| ||||||||||||| ||||||||||||||| |||||||||||  | |||||||||||||||||    
T  43473281 taaaaatccacgtagcattgccacatcatttagtatgcacatgtggcattgccacatcaggatcgttaaagaggagttaa 43473360  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 5021746 - 5021862
Alignment:
Q  288 taaaaatccatgtggcagtgccacatcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaatagcagggaccaattccata 387  Q
    |||||||||| |||||| ||||   ||||||||||||||||||||||||        || |||||||||||||||||||| ||||| |||||||||||||    
T  5021746 taaaaatccacgtggcaatgcccagtcatttggtatgcacatgtggcgt--------cagcaccgttaaagaggagttaacagcagagaccaattccata 5021837  T
Q  388 gatggagaattttagggggactaaaa 413  Q
     || ||||||||| || |||||||||    
T  5021838 aatagagaatttt-ggaggactaaaa 5021862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 461
Target Start/End: Complemental strand, 35213446 - 35213373
Alignment:
Q  389 atggagaattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaaccctaaaa 461  Q
    ||||| |||||||| ||||||||||| || ||| ||||||||||   ||| |||||||||| ||||||||||||    
T  35213446 atggaaaattttagagggactaaaataaaaagtttgtatatttataaggaccaaaaacatatttaaccctaaaa 35213373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 8895911 - 8896019
Alignment:
Q  273 tccacgtcagcaaagtaaaaatccatgtggcagtgccacatcatttggtatgcacatgtggcgttgccacatcaacaccgttaaagaggagttaatagca 372  Q
    |||||||||||| ||| ||| | || ||||||||||||||||||||||||||||||| |||  ||| ||  |||||| |||| |||||||||||| || |    
T  8895911 tccacgtcagcacagtcaaatttcacgtggcagtgccacatcatttggtatgcacatatggtattgtcatgtcaacatcgtt-aagaggagttaacagta 8896009  T
Q  373 gggaccaatt 382  Q
    ||||| ||||    
T  8896010 gggactaatt 8896019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 31311326 - 31311398
Alignment:
Q  391 ggagaattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaaccctaaaat 462  Q
    |||||||||||| ||||||||||| || ||| ||||||||||  |||| |||||||||| |||||||||||||    
T  31311326 ggagaattttagagggactaaaatgaaaagtttgtatatttatagggaccaaaaacatatttaaccctaaaat 31311398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 55378803 - 55378742
Alignment:
Q  397 ttttagggggactaaaatcaatagtatgtatatttag-gggatcaaaaacataattaaccct 457  Q
    |||||| ||||||||||| || ||| ||||||||||  ||||||||||||||| ||||||||    
T  55378803 ttttagagggactaaaatgaaaagtttgtatatttatagggatcaaaaacatatttaaccct 55378742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 27277613 - 27277547
Alignment:
Q  395 aattttagggggactaaaatcaatagtatgtatattta-ggggatcaaaaacataattaaccctaaa 460  Q
    |||||||| ||||||||||  || ||| |||||||||| ||||| |||||||||| |||||||||||    
T  27277613 aattttagagggactaaaacgaaaagtttgtatatttatggggaccaaaaacatatttaaccctaaa 27277547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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