View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_4 (Length: 554)
Name: NF10281_low_4
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 50110380 - 50110921
Alignment:
| Q |
1 |
cctgtccaatgtgctgcatatttgccagaaccaacataagtagagcgggtcaaaataaaaggcctttttccttgaagcccttgaagggccttgtgagttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110380 |
cctgtccaatgtgctgcatatttgccagaaccaacataagtagagcgggtcaaaataaaaggcctttttccttgaagcccttgaagggccttgtgagttg |
50110479 |
T |
|
| Q |
101 |
caatggtttgagaaaaaccataaatactatgagcatcatattccaaaatgccattatagtggactgcacttgtggctatagttttgaaacctataggagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50110480 |
caatggtttgagaaaaaccataaatactatgagcatcatattccaaaatgccattatagtggactgcacttgtggctatagttttgaaaccaataggagc |
50110579 |
T |
|
| Q |
201 |
ttgtaatcctgaagcattaattttatagggaggatcatcccaccgtgtgcttgtgatgtttttgcaatctaagcaacatacccaaccaggtcctgttcca |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110580 |
ttgtaatcctgaagcattaattttgtagggaggatcatcccaccgtgtgcttgtgatgtttttgcaatctaagcaacatacccaaccaggtcctgttcca |
50110679 |
T |
|
| Q |
301 |
ctggggcacacctttcctgtaggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110680 |
ctggggcacacctttcctgtaggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcat |
50110779 |
T |
|
| Q |
401 |
ggaagcggcgaatctcatcaccccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
50110780 |
ggaagcggcgaatctcatcaccccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcctggccaaacttgtgccaagaatggttc |
50110879 |
T |
|
| Q |
501 |
accctcatgcttgataaaaacatcattagccatacccctttg |
542 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110880 |
accctcatgcttgataaaaacatcattagccatacccctttg |
50110921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 342 - 542
Target Start/End: Original strand, 50120744 - 50120944
Alignment:
| Q |
342 |
gcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatggaagcggcgaatctcatcaccccaccaagaaactgtttta |
441 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
50120744 |
gcaaaaatttgaaacttcattcatgtcaatccataatccatcaataggaacaagttcatggaagcggcgaatttcatcggcccaccaagaaactgtttta |
50120843 |
T |
|
| Q |
442 |
ggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttcaccctcatgcttgataaaaacatcattagccataccccttt |
541 |
Q |
| |
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||||||||||||||||||||||| || || || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
50120844 |
ggattgagaaaatcaggaaagtaaacagcccctggccaaaccatagccatgaatggttcaccttcatacttgataaaaacatcattagccataccccttt |
50120943 |
T |
|
| Q |
542 |
g |
542 |
Q |
| |
|
| |
|
|
| T |
50120944 |
g |
50120944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 50120397 - 50120675
Alignment:
| Q |
1 |
cctgtccaatgtgctgcatatttgccagaaccaacataagtagagcgggtcaaaataaaaggcctttttccttgaagcccttgaagggccttgtgagttg |
100 |
Q |
| |
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||||||||||| || ||||||||||| || || |||||||| || || | ||||| || || ||||| |||||||| | ||| |||||||| |||| |
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| T |
50120397 |
cctgtccaatgagcagcatatttgcctgatcctacataagtcgaacgagacaaaacgaatggtcttttaccttgaagttcggaaagtgccttgtgtgttg |
50120496 |
T |
|
| Q |
101 |
caatggtttgagaaaaaccataaatactatgagcatcatattccaaaatgccattatagtggactgcacttgtggctatagttttgaaacctatagg-ag |
199 |
Q |
| |
|
|||||| || ||| |||||| ||| ||||||||||||||||||||| | |||||||| || |||||||| ||||||||||||||| | ||||| || | |
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|
| T |
50120497 |
caatggcttcagagaaaccaaaaagactatgagcatcatattccaacacaccattataatgaactgcactagtggctatagttttgtaccctattggaat |
50120596 |
T |
|
| Q |
200 |
cttgtaatcctgaagcattaattttatagggaggatcatcccaccgtgtgcttgtgatgtttttgcaatctaagcaacat |
279 |
Q |
| |
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|| || |||||||||||| ||||| || |||||||||||||| | |||||||||||||||| | ||||||||||||||| |
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| T |
50120597 |
ctcgt-ttcctgaagcattgattttgtaaggaggatcatcccatcttgtgcttgtgatgtttgtacaatctaagcaacat |
50120675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 4 - 542
Target Start/End: Complemental strand, 23934419 - 23933881
Alignment:
| Q |
4 |
gtccaatgtgctgcatatttgccagaaccaacataagtagagcgggtcaaaataaaaggcctttttccttgaagcccttgaagggccttgtgagttgcaa |
103 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || || | |||||||||||||||||| |||| ||| || |||| ||||||||||||| | |
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| T |
23934419 |
gtccaatgtgcagcatatttgcccgaaccaacataagtggaccgcgacaaaataaaaggccttttgccttcaagtccaagaagacccttgtgagttgcga |
23934320 |
T |
|
| Q |
104 |
tggtttgagaaaaaccataaatactatgagcatcatattccaaaatgccattatagtggactgcacttgtggctatagttttgaaacctataggagcttg |
203 |
Q |
| |
|
|| ||| || |||||||| ||||||||||||||||| ||||| | || ||||||||| |||||| |||||||| |||||| | || || |||||||| |
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| T |
23934319 |
cggattgcgagaaaccatagatactatgagcatcatactccaagacaccgttatagtgggttgcactggtggctattgttttgtatccgattggagcttg |
23934220 |
T |
|
| Q |
204 |
taatcctgaagcattaattttatagggaggatcatcccaccgtgtgcttgtgatgtttttgcaatctaagcaacatacccaaccaggtcctgttccactg |
303 |
Q |
| |
|
| ||| ||||| || ||||| || |||||||| ||||| | ||| | |||||||| ||||| || |||||||||| ||| || |||||||||||| | |
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|
| T |
23934219 |
aattcccgaagcgttgattttgtaaggaggatcgtcccatcttgttttggtgatgttcttgcagtccaagcaacatatccatcctggtcctgttccattc |
23934120 |
T |
|
| Q |
304 |
gggcaca-cctttcctgtaggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatgg |
402 |
Q |
| |
|
|| || | | | | || | |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||| ||||| || || ||||||||| |
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| T |
23934119 |
ggacatatcgtgttct-tgggaattttgcatttaccagaacagaaatttgaagcttcgttcatgtcaatccataggccgtcaacaggtacgagttcatgg |
23934021 |
T |
|
| Q |
403 |
aagcggcgaatctcatcaccccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttcac |
502 |
Q |
| |
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|||||||| ||||| || |||||||| || || || |||||||||||||||||||||| || || || ||||| ||||| |||| ||| ||||| | |
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|
| T |
23934020 |
aagcggcggatctcgtcgacccaccaatttacagtctttggattgagaaaatcaggaaagtttaccgcccctggccacacttgagccaagaaaggttcgc |
23933921 |
T |
|
| Q |
503 |
cctcatgcttgataaaaacatcattagccatacccctttg |
542 |
Q |
| |
|
| || | |||||| |||||||| || || | ||||||||| |
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|
| T |
23933920 |
cttcgtacttgatgaaaacatcgttggctaaacccctttg |
23933881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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