View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10281_low_7 (Length: 501)

Name: NF10281_low_7
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10281_low_7
NF10281_low_7
[»] chr6 (11 HSPs)
chr6 (20-344)||(11170895-11171219)
chr6 (20-303)||(11276279-11276562)
chr6 (20-315)||(11209717-11210012)
chr6 (20-298)||(11197048-11197326)
chr6 (20-318)||(11156595-11156895)
chr6 (20-298)||(11241005-11241289)
chr6 (22-294)||(11133321-11133593)
chr6 (25-197)||(11200222-11200394)
chr6 (25-197)||(11161479-11161651)
chr6 (390-476)||(11171285-11171371)
chr6 (434-476)||(8382104-8382146)
[»] scaffold1207 (1 HSPs)
scaffold1207 (22-318)||(1212-1490)
[»] scaffold0734 (2 HSPs)
scaffold0734 (261-315)||(6714-6770)
scaffold0734 (434-476)||(1916-1958)
[»] chr7 (8 HSPs)
chr7 (434-477)||(41415672-41415715)
chr7 (434-476)||(2407358-2407400)
chr7 (434-476)||(7875716-7875758)
chr7 (174-288)||(6789991-6790105)
chr7 (232-294)||(8559870-8559932)
chr7 (214-288)||(8585281-8585355)
chr7 (434-476)||(40352671-40352713)
chr7 (180-289)||(3147757-3147866)
[»] chr5 (1 HSPs)
chr5 (434-476)||(5003527-5003569)
[»] chr8 (1 HSPs)
chr8 (434-476)||(18896459-18896501)
[»] chr1 (2 HSPs)
chr1 (435-476)||(33096059-33096100)
chr1 (172-230)||(15595516-15595571)
[»] chr2 (1 HSPs)
chr2 (250-294)||(7542781-7542825)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 11170895 - 11171219
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||    
T  11170895 actggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaa 11170994  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11170995 taccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaat 11171094  T
Q  220 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgn 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11171095 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatga 11171194  T
Q  320 nnnnnnnttggatcgctttatgaat 344  Q
           ||||||||||||||||||    
T  11171195 aaaacaattggatcgctttatgaat 11171219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 11276279 - 11276562
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11276279 actggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaa 11276378  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11276379 taccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaat 11276478  T
Q  220 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276479 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 11209717 - 11210012
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  11209717 actggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaa 11209816  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  11209817 taccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaat 11209916  T
Q  220 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 315  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209917 ggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 11197048 - 11197326
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||| ||||||||   |||||| |||||    
T  11197048 actggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaa 11197147  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||     
T  11197148 taccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaag 11197247  T
Q  220 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaa 298  Q
    |||||| |||||| |||||||||||| || |  || | ||| |||| ||||||||||||||||||||||||||||||||    
T  11197248 ggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 11156595 - 11156895
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |  |||| ||||||||   |||||| |||||    
T  11156595 actggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaa 11156694  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||| ||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||  ||||||||||||||     
T  11156695 taccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaag 11156794  T
Q  220 ggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactat 317  Q
    |||||| |||||| |||||||||||| || |  || | ||| |||| |||||||||||||||||||||||||||||||  || ||||||| |||||||||    
T  11156795 ggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactat 11156894  T
Q  318 g 318  Q
    |    
T  11156895 g 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 11241289 - 11241005
Alignment:
Q  20 actggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaa 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||| |||||||    |||||| |||||    
T  11241289 actggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaa 11241190  T
Q  120 taccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaat 219  Q
    |||||| ||||| |||| ||| ||||| ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||| ||||||||||||||     
T  11241189 taccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaag 11241090  T
Q  220 ggccacaacttcacatcactttgtactatgggatcac------taaatttccgaccaattagcctctttgcatctacaaaacaaa 298  Q
    ||||||||||||| |||||||||||  ||||| ||||      |||| |||| ||||||||||||||||||||||||||||||||    
T  11241089 ggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 11133321 - 11133593
Alignment:
Q  22 tggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaata 121  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |  ||||||| |||||||| ||||| | |||||    
T  11133321 tggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaata 11133420  T
Q  122 ccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatgg 221  Q
    |||| ||||| ||||  || ||||||||||| ||||||||  |||| || || ||||||||  | ||||||||||| | | ||||||||||||| |||||    
T  11133421 ccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatgg 11133520  T
Q  222 ccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaa 294  Q
    |||||| |||| |||||| || ||||| || ||||||||||  | |||||| |||||||| ||||||||||||    
T  11133521 ccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 11200222 - 11200394
Alignment:
Q  25 cgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaatacca 124  Q
    |||||||| ||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||    
T  11200222 cgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaatacca 11200321  T
Q  125 tggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcatt 197  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11200322 tggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 11161479 - 11161651
Alignment:
Q  25 cgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaatacca 124  Q
    ||||||||  |||||||||||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||    
T  11161479 cgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaatacca 11161578  T
Q  125 tggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcatt 197  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11161579 tggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 11171285 - 11171371
Alignment:
Q  390 gcttgtatagaaaatactcttatatatttaaccctataagaaatacaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    |||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11171285 gcttgtatagaaaatactattatatatttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaat 11171371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 8382104 - 8382146
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaat 8382146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 1212 - 1490
Alignment:
Q  22 tggcgttgtgagtcattaaagtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaata 121  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  1212 tggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaata 1311  T
Q  122 ccatggatgaaatttgttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatgg 221  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |                   | |||||||    
T  1312 ccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatgg 1393  T
Q  222 ccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 318  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1394 ccacaacttcacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 1490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  261 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 315  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 1916 - 1958
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  1916 acaatcttgagattttggtcccctataaaaaacaataacaaat 1958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 41415672 - 41415715
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaatt 477  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaatt 41415715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 2407358 - 2407400
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  2407358 acaatcttgcgattttggtcccctataaaaaacaataacaaat 2407400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 7875716 - 7875758
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaat 7875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 6789991 - 6790105
Alignment:
Q  174 aacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaatt 273  Q
    |||||||||||| || |||||||| | | || |||| || ||||||||||| ||| ||| |||| |||| || |  | ||||||||| |||| |||||||    
T  6789991 aacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaatt 6790090  T
Q  274 agcctctttgcatct 288  Q
    | |||||| ||||||    
T  6790091 aacctcttagcatct 6790105  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 8559870 - 8559932
Alignment:
Q  232 acatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaa 294  Q
    ||||||||||| ||||||| ||||||  ||||||  ||||||| ||||||||||||| |||||    
T  8559870 acatcactttggactatggaatcactgtatttccttccaattaacctctttgcatctgcaaaa 8559932  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 8585355 - 8585281
Alignment:
Q  214 ttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatct 288  Q
    ||||||||||||||| | | |||| |||| || | |||||||||||| |||| |||||||| |||||| ||||||    
T  8585355 ttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatct 8585281  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 40352671 - 40352713
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| |||||||||| | ||||||||||||||||||||    
T  40352671 acaatcttgcgattttggtcgcctataaaaaacaataacaaat 40352713  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  180 aatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctc 279  Q
    |||||| |||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||||| ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  280 tttgcatcta 289  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 5003527 - 5003569
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaat 5003569  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 18896459 - 18896501
Alignment:
Q  434 acaatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaat 18896501  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 33096059 - 33096100
Alignment:
Q  435 caatcttgggattttggtcccttataaaaaacaataacaaat 476  Q
    ||||||||  ||||||||||||||||||||| ||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaat 33096100  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  172 ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 230  Q
    ||||||| |||||| |||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 7542781 - 7542825
Alignment:
Q  250 ggatcactaaatttccgaccaattagcctctttgcatctacaaaa 294  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||    
T  7542781 ggatcactaaacttcctaccaattaacctcttagcatctacaaaa 7542825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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