View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10281_low_9 (Length: 418)
Name: NF10281_low_9
Description: NF10281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10281_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 93 - 400
Target Start/End: Complemental strand, 2289161 - 2288860
Alignment:
| Q |
93 |
ttatattgaaaatgagagaaaagagaaactatatcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaact |
192 |
Q |
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| T |
2289161 |
ttatattgaaaatgagagaaaagagaaactaaatcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaact |
2289062 |
T |
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| Q |
193 |
gattcagaataacatatcaagagagagagaatgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcct |
292 |
Q |
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| T |
2289061 |
gattcagaataacatatcaagagagagagaatgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcc- |
2288963 |
T |
|
| Q |
293 |
atagctatatactccctcttcattcctttatttttcttctgcattcgctttctccctatatctcttggttggttcccattttctttatacattttgcctt |
392 |
Q |
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| T |
2288962 |
-----tatatgctccctctgcattcctttatttttcttctgcattcgctttctccctatatctcttggttggttcccattttctttatacattttgcctt |
2288868 |
T |
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| Q |
393 |
catgcacc |
400 |
Q |
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|||||||| |
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| T |
2288867 |
catgcacc |
2288860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 125 - 395
Target Start/End: Original strand, 2255391 - 2255657
Alignment:
| Q |
125 |
atcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaactgattcagaat--aacatatcaagagagagaga |
222 |
Q |
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|||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
2255391 |
atcaacatacacatacaaaattcaaaaataaaaaatgagaattcaggaaaattggaataaatttaactgattcagaatttaacatatcacaagagagaga |
2255490 |
T |
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| Q |
223 |
atgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcctatagctatatactccctcttcattccttta |
322 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| |
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| T |
2255491 |
atgaaaaccaaatcctaacttaccttcttcacctagtttcaatggggagaccatggcactacacttg------tctatatactccctctgccttccttta |
2255584 |
T |
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| Q |
323 |
tttttcttctgcattcgctttctccctatatctcttggttggttcccattttctttatacattttgccttcat |
395 |
Q |
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|| || ||||||||||| | ||||||||||| ||||| |||||||||||||| || |||||||| ||||||| |
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| T |
2255585 |
ttcttgttctgcattcgttctctccctatatatcttgtttggttcccatttttgttttacatttttccttcat |
2255657 |
T |
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