View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10282_high_16 (Length: 238)
Name: NF10282_high_16
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6409244 - 6409466
Alignment:
| Q |
1 |
tcacaaaatgttatgtactcattgaaggattcgccaaaactttggtatacaaaagtaacaaattaatagtgacatgagaataggattcaactcagcaagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6409244 |
tcacaaaatgttctgtactcattgaaggattcaccaaaactttggtatacaaaagtaacaaattaatagtgacatgagaataggattcagctcagcaagt |
6409343 |
T |
|
| Q |
101 |
ggggcattatttgtgttgaatacacggttttactaaaagttcaaaaggaatcatccaacatatatgcatttccttttcaacttacaccgtgagtcataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6409344 |
ggggcattatttgtgttgaatacacggttttactaaaagttcaaaaggaatcacccaacatatatgcatttcaaattcaacttacaccgtgagtcataac |
6409443 |
T |
|
| Q |
201 |
tcataagtgaaccttgatcaaat |
223 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
6409444 |
tcataagtgaaccttgctcaaat |
6409466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6411995 - 6412207
Alignment:
| Q |
1 |
tcacaaaatgttatgtactcattgaaggattcgccaaaactttggtatacaaaagtaacaaattaatagtgacatgagaataggattcaactcagcaagt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6411995 |
tcacaaaatgttctgtactcattgaaggattcgccaaaactttggtatacaaaagtaacaaattaatagtgacatgagaataggattcaactcagcaagc |
6412094 |
T |
|
| Q |
101 |
ggggcattatttgtgttgaatacacggttttactaaaagttcaaaaggaatcatccaacatatatgcatttccttttcaacttacaccgtgagtcataat |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412095 |
ggggcattatttgtgttgaa----------tactaaaagttcaaaaggaatcatccaacatatatgcatttccttttcaacttacaccgtgagtcataat |
6412184 |
T |
|
| Q |
201 |
tcataagtgaaccttgatcaaat |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
6412185 |
tcataagtgaactttgatcaaat |
6412207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 6407193 - 6407102
Alignment:
| Q |
70 |
tgacatgagaataggattcaactcagcaagtggggcattatttgtgttgaatacacggtttta-ctaaaagttcaaaaggaatcatccaacata |
162 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||||| |||| | ||| ||||||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
6407193 |
tgacattagaataagattcaattcagcaagtggagcatggt--gtgctgaatacacggtttttgcaaaaagttcaaaaggaatcatccatcata |
6407102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 4966022 - 4965962
Alignment:
| Q |
163 |
tatgcatttccttttcaacttacaccgtgagtcataattcataagtgaaccttgatcaaat |
223 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
4966022 |
tatgcatttcaaattcaacttacaacgttagtcataactcataagtaaaccttgatcaaat |
4965962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University