View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_high_6 (Length: 351)
Name: NF10282_high_6
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 11356325 - 11356000
Alignment:
| Q |
19 |
gctgtgccattgggcttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcatgaaaattg |
118 |
Q |
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| T |
11356325 |
gctgtgccactgggcttttatatggttcacggttgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcacgaaaattg |
11356226 |
T |
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| Q |
119 |
aactattttactcggtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatgatttttagcttcatgtataatcaaatttta-gga |
217 |
Q |
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| T |
11356225 |
aactattttactcggtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatgatttttagcttcatgtataatcaaattctaggga |
11356126 |
T |
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| Q |
218 |
caaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11356125 |
caaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatat |
11356026 |
T |
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| Q |
318 |
acttagttctacgcttgctctgtgct |
343 |
Q |
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| T |
11356025 |
acttagttctacgcttgctctatgct |
11356000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 343
Target Start/End: Original strand, 11371083 - 11371394
Alignment:
| Q |
33 |
cttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcatgaaaattgaactattttactcg |
132 |
Q |
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| T |
11371083 |
cttgtatatggttcacggttgggattttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcacgaaaattgaactattttactcg |
11371182 |
T |
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| Q |
133 |
gtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatgatttttagcttcatgtataatcaaatttta-ggacaaaatcagttatg |
231 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
11371183 |
gtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatgatttttagcttcatgtataatcaaattctagggacaaaatcagttatg |
11371282 |
T |
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| Q |
232 |
atactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacgc |
331 |
Q |
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| T |
11371283 |
atactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacgc |
11371382 |
T |
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| Q |
332 |
ttgctctgtgct |
343 |
Q |
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||||||| |||| |
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| T |
11371383 |
ttgctctatgct |
11371394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 36529472 - 36529431
Alignment:
| Q |
248 |
aatcaaacatgtcaaaattagtcctacacttctaaaattaat |
289 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
36529472 |
aatcaaacatgtcaaaattaattctacatttctaaaattaat |
36529431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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