View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10282_low_11 (Length: 321)

Name: NF10282_low_11
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10282_low_11
NF10282_low_11
[»] chr1 (14 HSPs)
chr1 (89-181)||(48030131-48030223)
chr1 (237-306)||(48030002-48030071)
chr1 (241-306)||(15233851-15233916)
chr1 (89-135)||(35712520-35712566)
chr1 (89-135)||(35713636-35713682)
chr1 (1-76)||(48030267-48030342)
chr1 (242-304)||(17241867-17241929)
chr1 (90-178)||(13970018-13970105)
chr1 (241-301)||(9010825-9010885)
chr1 (89-137)||(43402327-43402375)
chr1 (238-277)||(42098524-42098563)
chr1 (115-181)||(9010952-9011018)
chr1 (251-301)||(13970774-13970824)
chr1 (89-153)||(24302999-24303063)
[»] chr7 (13 HSPs)
chr7 (89-181)||(21262048-21262141)
chr7 (89-177)||(21263217-21263306)
chr7 (242-304)||(5737403-5737465)
chr7 (243-304)||(19626902-19626964)
chr7 (238-279)||(21262202-21262243)
chr7 (241-303)||(13563076-13563138)
chr7 (241-303)||(32256193-32256255)
chr7 (89-134)||(23526709-23526754)
chr7 (89-131)||(7849203-7849244)
chr7 (89-130)||(19628126-19628167)
chr7 (257-306)||(22337191-22337240)
chr7 (99-135)||(23525665-23525701)
chr7 (89-125)||(47578533-47578569)
[»] chr6 (12 HSPs)
chr6 (89-181)||(21383714-21383807)
chr6 (89-177)||(21382549-21382638)
chr6 (90-157)||(26545785-26545853)
chr6 (238-279)||(21383612-21383653)
chr6 (241-304)||(17838950-17839013)
chr6 (241-304)||(29380433-29380496)
chr6 (247-295)||(21512672-21512720)
chr6 (89-128)||(26544411-26544450)
chr6 (90-137)||(32145123-32145169)
chr6 (257-306)||(23397175-23397224)
chr6 (239-279)||(26545659-26545699)
chr6 (89-137)||(32146027-32146075)
[»] chr4 (18 HSPs)
chr4 (89-181)||(1996951-1997044)
chr4 (89-177)||(1995935-1996024)
chr4 (243-306)||(7708597-7708660)
chr4 (238-279)||(1996849-1996890)
chr4 (243-285)||(16313994-16314036)
chr4 (259-304)||(36241352-36241397)
chr4 (90-177)||(12862611-12862699)
chr4 (89-128)||(5169380-5169419)
chr4 (89-155)||(16314121-16314188)
chr4 (89-124)||(56083421-56083456)
chr4 (251-301)||(5169538-5169588)
chr4 (89-178)||(23504962-23505052)
chr4 (89-177)||(6658653-6658742)
chr4 (241-306)||(23203741-23203806)
chr4 (241-294)||(40793012-40793065)
chr4 (92-136)||(5170325-5170368)
chr4 (89-137)||(39660436-39660484)
chr4 (92-128)||(52704715-52704751)
[»] chr5 (7 HSPs)
chr5 (90-181)||(7492926-7493018)
chr5 (89-175)||(27491175-27491262)
chr5 (89-135)||(27490168-27490214)
chr5 (242-295)||(7492824-7492877)
chr5 (243-306)||(30911971-30912034)
chr5 (239-276)||(39949274-39949311)
chr5 (241-305)||(39605257-39605321)
[»] chr8 (7 HSPs)
chr8 (238-306)||(44038785-44038853)
chr8 (101-181)||(44038915-44038994)
chr8 (241-306)||(13116572-13116637)
chr8 (101-177)||(44037681-44037757)
chr8 (100-177)||(26521899-26521977)
chr8 (241-279)||(45279922-45279960)
chr8 (115-153)||(40463527-40463565)
[»] chr2 (9 HSPs)
chr2 (241-304)||(18615749-18615812)
chr2 (241-304)||(29220696-29220759)
chr2 (241-304)||(29333995-29334058)
chr2 (241-295)||(18751243-18751297)
chr2 (238-306)||(31915836-31915904)
chr2 (238-277)||(18775303-18775342)
chr2 (89-132)||(29042401-29042444)
chr2 (241-279)||(6028959-6028997)
chr2 (241-306)||(1083248-1083313)
[»] chr3 (19 HSPs)
chr3 (89-157)||(34799932-34800001)
chr3 (89-136)||(39605646-39605693)
chr3 (238-279)||(34800087-34800128)
chr3 (250-304)||(10731099-10731153)
chr3 (89-135)||(34801332-34801378)
chr3 (243-285)||(36438566-36438608)
chr3 (89-128)||(39606584-39606623)
chr3 (241-304)||(40745247-40745310)
chr3 (89-135)||(37085479-37085525)
chr3 (89-135)||(37086682-37086728)
chr3 (251-301)||(39606415-39606465)
chr3 (89-135)||(52092839-52092885)
chr3 (241-279)||(53613125-53613163)
chr3 (251-301)||(54673425-54673475)
chr3 (241-306)||(41263901-41263966)
chr3 (241-306)||(42592802-42592867)
chr3 (89-137)||(15438537-15438585)
chr3 (241-301)||(34818349-34818409)
chr3 (89-181)||(52043319-52043411)
[»] scaffold0077 (1 HSPs)
scaffold0077 (241-305)||(52855-52919)
[»] scaffold0262 (1 HSPs)
scaffold0262 (115-153)||(4305-4343)
[»] scaffold0061 (1 HSPs)
scaffold0061 (89-170)||(9855-9936)
[»] scaffold0071 (1 HSPs)
scaffold0071 (89-137)||(23606-23654)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 48030223 - 48030131
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48030223 cttggagattctcccttataaaatgtagattctttggtttacacccccaggccatctgattggataaataagcttatgtggcgcgctgatgtg 48030131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 48030071 - 48030002
Alignment:
Q  237 gcaaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48030071 gcaaaaaataatactaaagatgtgaaatacctaaaatacccctgatgctaaattaaaaatcccaatttct 48030002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 15233916 - 15233851
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||| |||||||    
T  15233916 aaaataatgctaaagatgtgaaatacctaaaatacccctaatactaaattaaaaatcctaatttct 15233851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 35712520 - 35712566
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35712520 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35712566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 35713682 - 35713636
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35713682 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35713636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48030342 - 48030267
Alignment:
Q  1 agatatacgtatagaatagttgttatgatgcaatttcactannnnnnnnncagggttaataggcttttaccccctg 76  Q
    |||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||||||||||||    
T  48030342 agatatacgtatagaatagttgttataatgcaatttcactaatttttttttagggttaataggcttttaccccctg 48030267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 17241929 - 17241867
Alignment:
Q  242 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    |||| |||||||||||||||||||||||||||||||||  || ||| | ||||||||||||||    
T  17241929 aaatgatactaaagatgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaattt 17241867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 13970018 - 13970105
Alignment:
Q  90 ttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgat 178  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||||  |||| ||| ||||| ||| || | ||||||| |||||||    
T  13970018 ttggagattccccct-gtaaaatgaagattctttggtttatacccccaaaccatatgactggattaatgagatgatgtggcacgctgat 13970105  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 9010885 - 9010825
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    ||||| |||||||||| ||||||||||||||||||||||  || ||| | |||||||||||    
T  9010885 aaaatgatactaaagacgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaa 9010825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 43402327 - 43402375
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    ||||||||||||||  ||||||||  |||||||||||||||||||||||    
T  43402327 cttggagattcccctatgtaaaataaagattctttggtttacaccccca 43402375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 42098563 - 42098524
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaataccc 277  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  42098563 caaaaaataatactaaagatgtaaaatacctaaattaccc 42098524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 9011018 - 9010952
Alignment:
Q  115 agattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    |||||||||||||||||||||||  |||||||| ||||| |||  | | ||||||| ||||||||||    
T  9011018 agattctttggtttacacccccaaaccatctgactggattaatgtgatgatgtggcacgctgatgtg 9010952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 13970824 - 13970774
Alignment:
Q  251 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  13970824 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 13970774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 24302999 - 24303063
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggat 153  Q
    |||||||||||||||||| ||   | |||||||||| ||||||||| || ||||||||| |||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttacaccctcaagccatctgaatggat 24303063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 21262048 - 21262141
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  21262048 cttggagattcccccttgtaaaatgtagattctttggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21262141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 21263306 - 21263217
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||  || |||| ||||||||||| |||| |||||| |||||    
T  21263306 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaagatcacctgactggataaattaacttaagtggcgtgctga 21263217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 5737403 - 5737465
Alignment:
Q  242 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    |||| |||||||||||||||||||||||||||||||||  || ||| | ||||||||||||||    
T  5737403 aaatgatactaaagatgtgaaatacctaaaatacccctaatgttaattaaaaaatcccaattt 5737465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 19626902 - 19626964
Alignment:
Q  243 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaatt-aaaaatcccaattt 304  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  19626902 aataataccaaagatgtgaaatacctaaaataccccaaatgctaaattaaaaaatcccaattt 19626964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 21262202 - 21262243
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21262202 caaaaaataatactaaagatgcgaaatacctaaaatacccct 21262243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 13563076 - 13563138
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatt 303  Q
    |||||||||| |||||| |||||||||||||||||||||  ||| ||||||||| || |||||    
T  13563076 aaaataatacaaaagatatgaaatacctaaaatacccctaatgccaaattaaaattctcaatt 13563138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 32256255 - 32256193
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatt 303  Q
    |||||||| ||||||||||||| ||||||||||||||||  | | ||||||||||| ||||||    
T  32256255 aaaataatgctaaagatgtgaactacctaaaatacccctaataccaaattaaaaattccaatt 32256193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 23526754 - 23526709
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccc 134  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||    
T  23526754 cttggagattcccccctataaaatgaagattctttggtttacaccc 23526709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 7849244 - 7849203
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttaca 131  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  7849244 cttggagattcccc-ttgtaaaatgaagattctttggtttaca 7849203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 19628167 - 19628126
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttac 130  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  19628167 cttggagattcccccttgtaaaataaagattatttggtttac 19628126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 22337240 - 22337191
Alignment:
Q  257 tgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||| ||||||||||||||||  ||| |||||||||||| ||||||||    
T  22337240 tgtgaagtacctaaaatacccctaatgccaaattaaaaatctcaatttct 22337191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 23525665 - 23525701
Alignment:
Q  99 cccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  23525665 cccccctgtaaaatgaagattctttggtttacacccc 23525701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 47578569 - 47578533
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttgg 125  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  47578569 cttggagattcccccttttaaaatgaagattctttgg 47578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 21383807 - 21383714
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  21383807 cttggagattcccccttgtaaaatgtagattctttggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21383714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 21382549 - 21382638
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||  || |||| ||||||||||| |||| |||||| |||||    
T  21382549 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaagatcacctgactggataaattaacttaagtggcgtgctga 21382638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 26545853 - 26545785
Alignment:
Q  90 ttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaat 157  Q
    |||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||| |||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccctaaggccatctgactggataaat 26545785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 21383653 - 21383612
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21383653 caaaaaataatactaaagatgcgaaatacctaaaatacccct 21383612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 17839013 - 17838950
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    |||||| | |||||||| |||||||||||||||||||||  ||  |||||||||||||||||||    
T  17839013 aaaatattgctaaagatatgaaatacctaaaatacccctaatgtcaaattaaaaatcccaattt 17838950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 29380433 - 29380496
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    |||||| | |||||||| ||||||||||||||||||||   ||| |||||||||||||||||||    
T  29380433 aaaatattgctaaagatatgaaatacctaaaataccccaaatgccaaattaaaaatcccaattt 29380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 21512720 - 21512672
Alignment:
Q  247 atactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 295  Q
    |||||||||| || |||||||||||||||||||| | ||||||||||||    
T  21512720 atactaaagacgtaaaatacctaaaatacccctgattctaaattaaaaa 21512672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 26544411 - 26544450
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggttt 128  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  26544411 cttggagattcccccttgtaaaataaagattctttggttt 26544450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 32145123 - 32145169
Alignment:
Q  90 ttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  32145123 ttggagattccccct-gtaaaataaagattctttggtttacaccccca 32145169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 23397224 - 23397175
Alignment:
Q  257 tgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||| |||||    
T  23397224 tgtgaagtacctaaaatacccctaatgccaaattaaaaatcccactttct 23397175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 26545699 - 26545659
Alignment:
Q  239 aaaaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  26545699 aaaaattaatattaaagatgtgaaatacctaaactacccct 26545659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 32146075 - 32146027
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    |||||||||| |||| ||||||||  |||||| ||||||||||||||||    
T  32146075 cttggagatttccccctgtaaaataaagattcattggtttacaccccca 32146027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 1997044 - 1996951
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacac-ccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  1997044 cttggagattcccccttgtaaaatgtagattctttggtttacaccccccagtccatttgattggataaattagcttatgtggcgcgctgatgtg 1996951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 1995935 - 1996024
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||| || |||| |||||||||||||||| |||||| |||||    
T  1995935 cttggagattcccccttgtaaaatgtagattctttggtttacccccctaaggtcacctgactggataaattagcttaagtggcgtgctga 1996024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 7708660 - 7708597
Alignment:
Q  243 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||| || |||||||||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  7708660 aataatgctgaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcacaatttct 7708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 1996890 - 1996849
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1996890 caaaaaataatactaaagatgcgaaatacctaaaatacccct 1996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 16314036 - 16313994
Alignment:
Q  243 aataatactaaagatgtgaaatacctaaaatacccctgctgct 285  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  16314036 aataatactaaagatgtgaaatacctaaagtacccctactgct 16313994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 36241352 - 36241397
Alignment:
Q  259 tgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  36241352 tgaaacacctaaaatacccctgatgcaaaattaaaaatcccaattt 36241397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 12862699 - 12862611
Alignment:
Q  90 ttggagattcccccttgtaaaatgtagattctttggtttac-acccccaggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||||||||||||| |||||||||| ||| | ||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  12862699 ttggagattcccccttgtaaaatgaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctga 12862611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 5169380 - 5169419
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggttt 128  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  5169380 cttggagattcccccttgcaaaatgaagattctttggttt 5169419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 16314188 - 16314121
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataa 155  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||  ||| ||||||| |||||||    
T  16314188 cttggagattcccccttgtaaaataaagattctttggttcacccccctaaggtcatctgactggataa 16314121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 56083421 - 56083456
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttg 124  Q
    ||||||||||||||||||||||||| ||||||||||    
T  56083421 cttggagattcccccttgtaaaatgaagattctttg 56083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 5169538 - 5169588
Alignment:
Q  251 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  5169538 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 5169588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 23504962 - 23505052
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggc-catctgattggataaattagcttatgtggcgcgctgat 178  Q
    |||||||||||||||||||||  | ||||||||||| |||  | ||| | || ||||||| ||  |||||||||||||||||| |||||||    
T  23504962 cttggagattcccccttgtaatttatagattctttgattttgaaccctaagctcatctgactgtgtaaattagcttatgtggcacgctgat 23505052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 6658742 - 6658653
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttac-acccccaggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||| |||||||||| |||||||||| ||| | ||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  6658742 cttggagattcccctttgtaaaatgaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctga 6658653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 23203806 - 23203741
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| |||||||||    
T  23203806 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttct 23203741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 40793012 - 40793065
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaa 294  Q
    |||||||| |||| |||||||||||| ||||||||||||  ||| |||||||||    
T  40793012 aaaataatgctaacgatgtgaaatacttaaaatacccctaatgccaaattaaaa 40793065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 5170368 - 5170325
Alignment:
Q  92 ggagattcccccttgtaaaatgtagattctttggtttacaccccc 136  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||    
T  5170368 ggagattccccct-gtaaaatgaagattctttggtttacgccccc 5170325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 39660436 - 39660484
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    |||||||||||| |  ||||||||  |||||||||||||||||||||||    
T  39660436 cttggagattcctcactgtaaaataaagattctttggtttacaccccca 39660484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 52704715 - 52704751
Alignment:
Q  92 ggagattcccccttgtaaaatgtagattctttggttt 128  Q
    ||||||||||||||||||||| || ||||||||||||    
T  52704715 ggagattcccccttgtaaaatttaaattctttggttt 52704751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 7493018 - 7492926
Alignment:
Q  90 ttggagattcccccttgtaaaatgtagattctttggtttaca-cccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||| ||||||||||||||||    
T  7493018 ttggagattccctcttgtaaaatgtagattctttggttcacatcccccaaaccatctcattggataaattagcttaggtggcgcgctgatgtg 7492926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 27491262 - 27491175
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgct 175  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||| ||| |||| ||||||| ||||    
T  27491262 cttggagattccccattgtaaaatgaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgct 27491175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 27490168 - 27490214
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27490168 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 27490214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 7492877 - 7492824
Alignment:
Q  242 aaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 295  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  7492877 aaataatactaaagatgtgaaatacctaaagtacccctaatgctaaattaaaaa 7492824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 30912034 - 30911971
Alignment:
Q  243 aataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||| ||||||||||||||||||||||| ||||||  ||| |||||||||||| ||||||||    
T  30912034 aataatgctaaagatgtgaaatacctaaaacacccctattgccaaattaaaaatcacaatttct 30911971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 39949311 - 39949274
Alignment:
Q  239 aaaaaataatactaaagatgtgaaatacctaaaatacc 276  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39949311 aaaaaataatactaaagatgtgaaatacctaaactacc 39949274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 39605321 - 39605257
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttc 305  Q
    |||||||| |||| ||||||||||||  |||||||||||  ||| ||||||||| || |||||||    
T  39605321 aaaataatgctaacgatgtgaaatacaaaaaatacccctaatgccaaattaaaattctcaatttc 39605257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 44038853 - 44038785
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  44038853 caaaaaataatactaaatatgtgaaatacctaaaatacccctaatgctaaattaaaaatcccaatttct 44038785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 44038994 - 44038915
Alignment:
Q  101 cccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    ||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||  |||||||||    
T  44038994 cccttataaaatgtagattctttggtttaca-ccccagaccatttgattggataaattagcttacgtggcatgctgatgtg 44038915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 13116572 - 13116637
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| ||| |||||||    
T  13116572 aaaataatgctaaagatgtgaaatacctaaaatatccctaatgctaaattaaaagtcctaatttct 13116637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 44037681 - 44037757
Alignment:
Q  101 cccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    ||||||||||||||||||| ||||||| || |||  ||| || |||| |||||||||||||||| |||||| |||||    
T  44037681 cccttgtaaaatgtagattttttggttcaccccctaaggtcacctgactggataaattagcttaagtggcgtgctga 44037757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 26521977 - 26521899
Alignment:
Q  100 ccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaattagcttatgtggcgcgctga 177  Q
    |||||||||||||| |||||||||||||||||||||  | | ||||||| ||||| ||| |||| ||||||| ||||||    
T  26521977 ccccttgtaaaatgaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtggcacgctga 26521899  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 45279922 - 45279960
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  45279922 aaaataatactaaagatgtgaaatacctaaaatatccct 45279960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 40463565 - 40463527
Alignment:
Q  115 agattctttggtttacacccccaggccatctgattggat 153  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  40463565 agattctttgatttacacccccaagccatctgattggat 40463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 18615749 - 18615812
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  18615749 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaattt 18615812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 29220759 - 29220696
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  29220759 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaattt 29220696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 29334058 - 29333995
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    ||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  29334058 aaaataatattaaagatgtgaaatacctaaaatacccctaatgccaaattaaaaatcccaattt 29333995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 18751297 - 18751243
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaa 295  Q
    ||||||||||||||||| |||||||||||||||||||||  || |||||||||||    
T  18751297 aaaataatactaaagatttgaaatacctaaaatacccctaatgttaaattaaaaa 18751243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 31915904 - 31915836
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    |||||||||||  ||||||||||||||||||||| ||||  |  |||||||||| ||||||||||||||    
T  31915904 caaaaaataatgttaaagatgtgaaatacctaaagtacctataatgctaaattacaaatcccaatttct 31915836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 18775342 - 18775303
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaataccc 277  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18775342 caaaaaataatactaaagatgtgaaatacctaaagtaccc 18775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 29042401 - 29042444
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacac 132  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  29042401 cttggagattcccccttgaaaaatgaagattctttggtttacac 29042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 6028959 - 6028997
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6028959 aaaataatactaaatatgtgaaatacctaaaatacccct 6028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 1083248 - 1083313
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| |||||||||    
T  1083248 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttct 1083313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 34799932 - 34800001
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc-caggccatctgattggataaat 157  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||  ||||||||||| |||||||||    
T  34799932 cttggagattcccccttgcaaaatgaagattctttggtttacccccctaaggccatctgactggataaat 34800001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 39605646 - 39605693
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccc 136  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  39605646 cttggagattcccccctgtaaaatgaagattctttggtttacaccccc 39605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 34800087 - 34800128
Alignment:
Q  238 caaaaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  34800087 caaaaaataatactaaagatgtgaaatacctaaactacccct 34800128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 10731099 - 10731153
Alignment:
Q  250 ctaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    ||||||||||||||||||||||| ||||||  ||  |||||||||||||||||||    
T  10731099 ctaaagatgtgaaatacctaaaacacccctaatgtcaaattaaaaatcccaattt 10731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 34801378 - 34801332
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||    
T  34801378 cttggagattcccccttgtaaaataaagattctttggtttacccccc 34801332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 36438608 - 36438566
Alignment:
Q  243 aataatactaaagatgtgaaatacctaaaatacccctgctgct 285  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  36438608 aataatactaaagatgtgaaatacctaaagtacccctactgct 36438566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 39606623 - 39606584
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggttt 128  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  39606623 cttggagattcccccttgcaaaatgaagattctttggttt 39606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 40745310 - 40745247
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaattt 304  Q
    |||||| | |||||||||||||||| |||||||| ||||  ||| |||| ||||||||||||||    
T  40745310 aaaatagtgctaaagatgtgaaataactaaaataaccctaatgccaaataaaaaatcccaattt 40745247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 37085479 - 37085525
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  37085479 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37085525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 37086728 - 37086682
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    ||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  37086728 cttggagattcccccctgtaaaataaagattctttggtttacccccc 37086682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 39606465 - 39606415
Alignment:
Q  251 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  39606465 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 39606415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 52092885 - 52092839
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccc 135  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||||    
T  52092885 cttggagattcctccttgtaaaataaagattctttgatttacacccc 52092839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 53613125 - 53613163
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccct 279  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  53613125 aaaataatacaaaagatatgaaatacctaaaatacccct 53613163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 54673475 - 54673425
Alignment:
Q  251 taaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    |||| ||||||||||||||||||||||||  || |||||||||||| ||||    
T  54673475 taaaaatgtgaaatacctaaaatacccctaatgataaattaaaaattccaa 54673425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 41263901 - 41263966
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| |||||||||    
T  41263901 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttct 41263966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 42592802 - 42592867
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttct 306  Q
    ||||||||  |||| | |||||||||||||||||||| |  ||| ||||||||||| |||||||||    
T  42592802 aaaataatggtaaataagtgaaatacctaaaatacccataatgccaaattaaaaattccaatttct 42592867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 15438537 - 15438585
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    ||||||||||||||| ||||||||  ||||||||||| |||| ||||||    
T  15438537 cttggagattcccccctgtaaaatagagattctttggattaccccccca 15438585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 34818349 - 34818409
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaa 301  Q
    ||||||||| ||||||| |||||||||||||||| || |  | | ||||||||||||||||    
T  34818349 aaaataatagtaaagatatgaaatacctaaaatatccataataccaaattaaaaatcccaa 34818409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 52043411 - 52043319
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggcgcgctgatgtg 181  Q
    |||| ||||||||| ||| || ||  ||||| ||||||||||||||||| | ||||||| ||||| ||| || | ||||||| || |||||||    
T  52043411 cttgaagattcccctttgaaatatcaagattatttggtttacacccccaagtcatctgactggatcaatgagatgatgtggcacgatgatgtg 52043319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 52855 - 52919
Alignment:
Q  241 aaaataatactaaagatgtgaaatacctaaaatacccctgctgctaaattaaaaatcccaatttc 305  Q
    |||||||| |||| ||| |||||||||||||||||||||  ||| ||||||||| || |||||||    
T  52855 aaaataatgctaacgatatgaaatacctaaaatacccctaatgcaaaattaaaattctcaatttc 52919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 4343 - 4305
Alignment:
Q  115 agattctttggtttacacccccaggccatctgattggat 153  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4343 agattatttggtttacacccccaagccatctgattggat 4305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 9855 - 9936
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacacccccaggccatctgattggataaattagcttatgtggc 170  Q
    |||||| |||||||||||||||||  |||||||||| ||||| |||  || |||||||| ||||| ||| || | |||||||    
T  9855 cttggaaattcccccttgtaaaataaagattctttgatttaccccctaagaccatctgactggattaatgagatgatgtggc 9936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 23654 - 23606
Alignment:
Q  89 cttggagattcccccttgtaaaatgtagattctttggtttacaccccca 137  Q
    ||||||||||||||| ||||||||  ||||||||||| |||| ||||||    
T  23654 cttggagattcccccctgtaaaatagagattctttggattaccccccca 23606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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