View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_12 (Length: 321)
Name: NF10282_low_12
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 28667016 - 28666721
Alignment:
| Q |
10 |
agaagcaaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattt |
109 |
Q |
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| T |
28667016 |
agaaacaaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattt |
28666917 |
T |
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| Q |
110 |
tatactagctgggagagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagata |
209 |
Q |
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| T |
28666916 |
tatactagctgggagagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagata |
28666817 |
T |
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| Q |
210 |
tgcaaggtggtgagtcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttg |
305 |
Q |
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| T |
28666816 |
tgcaaggtggtgagtcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttg |
28666721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 13887542 - 13887747
Alignment:
| Q |
21 |
tcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctg |
120 |
Q |
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||||||||||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||||| |
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| T |
13887542 |
tcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctg |
13887641 |
T |
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| Q |
121 |
ggagagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggt |
220 |
Q |
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| T |
13887642 |
ggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattagaagagatttgcagggttgt |
13887741 |
T |
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| Q |
221 |
gagtca |
226 |
Q |
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|||||| |
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| T |
13887742 |
gagtca |
13887747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 13897665 - 13897384
Alignment:
| Q |
24 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
123 |
Q |
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| T |
13897665 |
gatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctggga |
13897566 |
T |
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| Q |
124 |
gagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgag |
223 |
Q |
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| T |
13897565 |
gagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgtg |
13897466 |
T |
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| Q |
224 |
tcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttg |
305 |
Q |
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||| || | ||||| || ||||||| ||| | ||||||||| ||| | |||||| ||||| || |||||||| |||||| |
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| T |
13897465 |
tcaaagggaggatattaataaggaagtgtttaatgattctttgagattcaagcctgaggagattaagaagatggattatttg |
13897384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 7295696 - 7295586
Alignment:
| Q |
25 |
atttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggag |
124 |
Q |
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||||||||||||| || |||| | | | |||||||||||||| | | || |||||||||| | ||||||||||||| ||||||| ||| |||| ||||| |
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| T |
7295696 |
atttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataagtgt--gagggatatatgtttgaatttcatattagccgggag |
7295599 |
T |
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| Q |
125 |
agacacttcttct |
137 |
Q |
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||||||||||||| |
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| T |
7295598 |
agacacttcttct |
7295586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 1034722 - 1034525
Alignment:
| Q |
24 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
123 |
Q |
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|||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||| |
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| T |
1034722 |
gatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaattttatattagctggga |
1034623 |
T |
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| Q |
124 |
gagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtg |
221 |
Q |
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||||||||||||| || |||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||||||| || |||| ||||||| |
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| T |
1034622 |
gagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggtggtg |
1034525 |
T |
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