View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_13 (Length: 304)
Name: NF10282_low_13
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 29495089 - 29494874
Alignment:
| Q |
14 |
agagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacggg |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29495089 |
agagtgtcggcgagcgtgctacggttgaaagaaaaccggcgacgagagagagcacaaatagataataatggagacacaatggatttcaatcagcgacggg |
29494990 |
T |
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| Q |
114 |
tgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgag |
213 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||| | |
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| T |
29494989 |
tgaaaggggagagtcgaagatcgacggcggcgacggtgaaatctcgc--gaggtgctagagttgggagaaaagggaaatggcatgggagagggagatggg |
29494892 |
T |
|
| Q |
214 |
accaatcctctgctacag |
231 |
Q |
| |
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|| ||||||||||||||| |
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| T |
29494891 |
acgaatcctctgctacag |
29494874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 6608159 - 6607944
Alignment:
| Q |
14 |
agagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacggg |
113 |
Q |
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|||| |||||| || ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
6608159 |
agagcgtcggcgagggtgctacagttaaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatggg |
6608060 |
T |
|
| Q |
114 |
tgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgag |
213 |
Q |
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|||||||||||||||||| ||||||| |||||||| ||||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||| | |
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| T |
6608059 |
tgaaaggggagaatcgaatatcgacgacggcgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgagagagagagatggg |
6607962 |
T |
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| Q |
214 |
accaatcctctgctacag |
231 |
Q |
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|||||||||| |||||| |
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| T |
6607961 |
cccaatcctctactacag |
6607944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 6625947 - 6626156
Alignment:
| Q |
14 |
agagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacggg |
113 |
Q |
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|||| |||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
6625947 |
agagcgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatggg |
6626046 |
T |
|
| Q |
114 |
tgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgag |
213 |
Q |
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|||||||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
6626047 |
tgaaaggggagaatcgaatatcga------cgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagagatggg |
6626138 |
T |
|
| Q |
214 |
accaatcctctgctacag |
231 |
Q |
| |
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|||||||||| |||||| |
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| T |
6626139 |
cccaatcctctactacag |
6626156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 19843430 - 19843237
Alignment:
| Q |
14 |
agagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacggg |
113 |
Q |
| |
|
|||| |||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
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| T |
19843430 |
agagcgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcggg |
19843331 |
T |
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| Q |
114 |
tgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
209 |
Q |
| |
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|||||||||||||||||||||| ||| || ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19843330 |
tgaaaggggagaatcgaagatcaacgacggtgacggtgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagaga |
19843237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 9793666 - 9793838
Alignment:
| Q |
29 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
128 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||||| | |||||||||||| | ||||||||||||| ||||| ||||||||||||| ||| |
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| T |
9793666 |
gtgctacggttgaaagaaaaccgctggcgagagagagcacaaaggaagaataatggagacgcgatggatttcaatcagcgacaggtgaaaggggaggatc |
9793765 |
T |
|
| Q |
129 |
gaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
209 |
Q |
| |
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|| |||||| ||| ||||||||| || |||||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
9793766 |
gatgatcga------agacagtgaaatcttgc--aaggtgctagggttgggaggaaagggaaagggcatgggggagagaga |
9793838 |
T |
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