View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10282_low_15 (Length: 268)
Name: NF10282_low_15
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 42498989 - 42498878
Alignment:
| Q |
84 |
aatatttatctattctactttccctaaatgataataacgtcttatgatgttattgcctgcagatggcctgaaaacaattgaggggaggtgtgccactggc |
183 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42498989 |
aatatttatctattctactgtccctaaatgataataacgtcttatgatgttattgcctgcagatggcctgaaaacaattgaggggaggtgtgccactggc |
42498890 |
T |
|
| Q |
184 |
aaatacaccagg |
195 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42498889 |
aaatacaccagg |
42498878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 42498846 - 42498810
Alignment:
| Q |
221 |
caaatatgtgtccagatatttataaccatcgtcctat |
257 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42498846 |
caaatatttgtccagatatttataaccatcgtcctat |
42498810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 42499017 - 42498989
Alignment:
| Q |
18 |
atactatccagtccatttgactatgttca |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42499017 |
atactatccagtccatttgactatgttca |
42498989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University