View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_16 (Length: 265)
Name: NF10282_low_16
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 52760966 - 52760731
Alignment:
| Q |
23 |
caccgctcatgcttcggcgccaagtgttactaaaacgcatgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatc |
122 |
Q |
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| T |
52760966 |
caccgctcatgcttcggcgccaagtgttactaaaacgcatgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatc |
52760867 |
T |
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| Q |
123 |
aatgttgtggtggctttggtcttaggaagctttgttttttagaatgttggtagtttacatgcatctaaacatcgttgcttttatttcctgtctttatgtt |
222 |
Q |
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| T |
52760866 |
aatgttgtggtggctttggtcttaggaagctttgttttttagaatgttggtagtttacatgcatctaaacatcgttgcttttatttcctgtctttatgtt |
52760767 |
T |
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| Q |
223 |
gttgaatttcgtcgtactctagtttagtctctgctt |
258 |
Q |
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| T |
52760766 |
gttgaatttcgtcgtactctagtttagtctctgctt |
52760731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 52796883 - 52796987
Alignment:
| Q |
61 |
atgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgtttt |
160 |
Q |
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| T |
52796883 |
atgctccttcaccaagtcctaatcgttcgggttctgcgaggatgagtgggtctgttggggtcagtgttgtggtggcttttgtcttaggaagctttgctat |
52796982 |
T |
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| Q |
161 |
ttaga |
165 |
Q |
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| T |
52796983 |
ttaga |
52796987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 52798774 - 52798882
Alignment:
| Q |
62 |
tgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttt |
161 |
Q |
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| T |
52798774 |
tgctccggcgcctagtcctaaacattcgggttctaccaggttgagtggttctgatggtgttagtgttgtggtggctttggtcttaggaacctttgctttt |
52798873 |
T |
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| Q |
162 |
tagaatgtt |
170 |
Q |
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| T |
52798874 |
tagaatgtt |
52798882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 38710731 - 38710644
Alignment:
| Q |
83 |
tcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgtt |
170 |
Q |
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| T |
38710731 |
tcattcgggttctaggaggttgagtggttttgttggtgtgagtgttgtggtggctttggtcttaggaagctttgctttttagaatgtt |
38710644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 42094344 - 42094276
Alignment:
| Q |
102 |
ttgagtggttatgttggtatcaatgttgtggtggctttggtcttaggaagctttgttttttagaatgtt |
170 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||||||||| |
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| T |
42094344 |
ttgagtggttctgttggtgtcaatgttgtggtggcattggtattaggaagccttgctttttagaatgtt |
42094276 |
T |
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