View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_17 (Length: 253)
Name: NF10282_low_17
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6411850 - 6411635
Alignment:
| Q |
1 |
ttttccaaaacctggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagttttacatacttcttgtttc |
100 |
Q |
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| T |
6411850 |
ttttccaaagcctggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagttttacatacttcttgtttc |
6411751 |
T |
|
| Q |
101 |
ttatttgccacccatcttaaaaaattacagacttcggcaaattattttgatcagttcactgaatcgtgctgttcaaatttaagcccatagcctattatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411750 |
ttatttgccacccatcttaaaaaattacagacttcggcaaattattttgatcagttcactgaatcgtgctgttcaaatttaagcccatagcctattatat |
6411651 |
T |
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| Q |
201 |
attgatattgagctta |
216 |
Q |
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|||||||||||||||| |
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| T |
6411650 |
attgatattgagctta |
6411635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 6409096 - 6408968
Alignment:
| Q |
3 |
ttccaaaacctggtgtgaacttagtaactggtttttgtaacctacgaatatgtacaaaaccaggtttaaaatatccagtttta------catacttcttg |
96 |
Q |
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||||||||||||||||||||||||||| || || |||||| |||| ||| |||||||||||||||||||||| || ||||||| || |||||||| |
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| T |
6409096 |
ttccaaaacctggtgtgaacttagtaattgattgttgtaaactactaatttgtacaaaaccaggtttaaaatttcaagttttaacactgcaaacttcttg |
6408997 |
T |
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| Q |
97 |
tttcttatttgccacccatcttaaaaaat |
125 |
Q |
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||||||||| |||| |||||||| |||| |
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| T |
6408996 |
tttcttattcgccattcatcttaacaaat |
6408968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 6408529 - 6408489
Alignment:
| Q |
169 |
ctgttcaaatttaagcccatagcctattatatattgatatt |
209 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |
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| T |
6408529 |
ctgttccaatttaagcccatagcctattatatatcgatatt |
6408489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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