View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_22 (Length: 240)
Name: NF10282_low_22
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 880401 - 880625
Alignment:
| Q |
1 |
caacgatgaaattatctcgaatgcattataaaaaggacgagacggtttcaccattaccaattcaggaatatcaacatcatcttcaccaatctcattgaaa |
100 |
Q |
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| T |
880401 |
caacgatgaaattatctcgaatgcattataaaaaggacgagacggtttcaccattaccaattcaggaatatcaacatcatcttcaccaatctcactgaaa |
880500 |
T |
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| Q |
101 |
tcaatattgatatctttgttgttttcttcaatactcaaatccctcattgaaaatgcaatgggcctaacaaacccaactcgaaaccaaggatcattcataa |
200 |
Q |
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| T |
880501 |
tcaatattgatatctttgttgttgtcttcaatactcaaatccttcattgaaaatgcaatgggtctaacaaacccaactcgaaaccaaggatgattcataa |
880600 |
T |
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| Q |
201 |
tatcaacaattgaatacctcttttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
880601 |
tatcaacaattgaatacctcttttt |
880625 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 45268038 - 45268118
Alignment:
| Q |
144 |
tcattgaaaatgcaatgggcctaacaaacccaactcgaaaccaaggatcattcataatatcaacaattgaatacctctttt |
224 |
Q |
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| T |
45268038 |
tcattgaaaaagcaataggtctcataaatccaatttgaaaccaaggatctttcataatatcaggaattgaaaacctctttt |
45268118 |
T |
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