View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_5 (Length: 370)
Name: NF10282_low_5
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 91 - 355
Target Start/End: Complemental strand, 39816978 - 39816714
Alignment:
| Q |
91 |
cgctatattagggttttgtcgtgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtat |
190 |
Q |
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| T |
39816978 |
cgctatattagggttttgtcatgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtat |
39816879 |
T |
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| Q |
191 |
ttttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatacgttaattgatgaatagttgtttgcttta |
290 |
Q |
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| T |
39816878 |
ttttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatttgttaattgatgaatagttgtttgcttta |
39816779 |
T |
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| Q |
291 |
tcgtttcctgtaaattagttgaacgctgatactatgtcgttgatctgattgtagtttactctgtg |
355 |
Q |
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| T |
39816778 |
tcgtttcctgtaaattagttgaacgctgatactatgtcgttgatctgattgtagtttactctgtg |
39816714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 93 - 314
Target Start/End: Complemental strand, 39816650 - 39816428
Alignment:
| Q |
93 |
ctatattagggttttgtcgtgtatctctttaataagatgagcttttgattctgattatagtgataacttgtggaaacaggatgtgggcggtctggtattt |
192 |
Q |
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| T |
39816650 |
ctatattagggttttgtcgtgtatctctttaatgagacgaggttttgattctggttatagtgataaattgtggaaacaggatgctagcagttcagtattt |
39816551 |
T |
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| Q |
193 |
ttcgctaattatagcattgagtttcatctccaattactgatttgaagtaataaaactattgttttgatacgttaattgatgaatagttgttt-gctttat |
291 |
Q |
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| T |
39816550 |
ttcgtcagttatagcattgaattttatctctaattattgacttgaagtaataaaactactgttttgatgcattaatggatgaattgttgtttacctttat |
39816451 |
T |
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| Q |
292 |
cgtttcctgtaaattagttgaac |
314 |
Q |
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| T |
39816450 |
cgtttccgttaaatttgttgaac |
39816428 |
T |
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