View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10282_low_7 (Length: 362)
Name: NF10282_low_7
Description: NF10282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10282_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 38110992 - 38110671
Alignment:
| Q |
15 |
gaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgcatatgtatgtagggattagattttgtgatat |
114 |
Q |
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| T |
38110992 |
gaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgcatatgtatgtagggattagattttgtgatat |
38110893 |
T |
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| Q |
115 |
cagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt-gggaggaaaacataaatatgtacaatgggcaagagaacg |
213 |
Q |
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| T |
38110892 |
cagagtcaaaaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacg |
38110793 |
T |
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| Q |
214 |
tggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatatcatatcatat |
313 |
Q |
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| T |
38110792 |
tggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatat---------- |
38110703 |
T |
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| Q |
314 |
catactttctttttggtgttaggtatcatata |
345 |
Q |
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| T |
38110702 |
catactttctttttggtgttaggtatcatata |
38110671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 93 - 292
Target Start/End: Complemental strand, 38085815 - 38085615
Alignment:
| Q |
93 |
tagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgcttg-ggaggaaaacataaat |
191 |
Q |
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| T |
38085815 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
38085716 |
T |
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| Q |
192 |
atgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggt |
291 |
Q |
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| T |
38085715 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggt |
38085616 |
T |
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| Q |
292 |
a |
292 |
Q |
| |
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| T |
38085615 |
a |
38085615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 75 - 292
Target Start/End: Complemental strand, 38142498 - 38142280
Alignment:
| Q |
75 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
174 |
Q |
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| T |
38142498 |
aatatttgcatgtgtacgtagggattggattttgtgatatcagaggcaaacaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38142399 |
T |
|
| Q |
175 |
g-ggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatacta |
273 |
Q |
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| T |
38142398 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaatcctcttgttaagcaatacta |
38142299 |
T |
|
| Q |
274 |
caaaaaccatgttaaggta |
292 |
Q |
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||||||| ||||||||||| |
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| T |
38142298 |
caaaaacaatgttaaggta |
38142280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 292
Target Start/End: Complemental strand, 38155844 - 38155626
Alignment:
| Q |
75 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
174 |
Q |
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| T |
38155844 |
aatacttgcatgtgtatgtagggtttggattttgtgatatcagaggcaagaaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38155745 |
T |
|
| Q |
175 |
g-ggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatacta |
273 |
Q |
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| T |
38155744 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaaccctcttgttaagcaatacta |
38155645 |
T |
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| Q |
274 |
caaaaaccatgttaaggta |
292 |
Q |
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||||||| ||||||||||| |
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| T |
38155644 |
caaaaacaatgttaaggta |
38155626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 38090802 - 38090602
Alignment:
| Q |
89 |
tatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgcttg-ggaggaaaacat |
187 |
Q |
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| T |
38090802 |
tatgcagggattagattttgtgatatcagaggcaagcaaatatggagtgaaattgatactaagcttagccaataattggaataattttggaggcaaaaac |
38090703 |
T |
|
| Q |
188 |
aaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgtta |
287 |
Q |
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| T |
38090702 |
aaatatgttcaatgggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctcttgttaagcaatactacaaaaatcatgtta |
38090603 |
T |
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| Q |
288 |
a |
288 |
Q |
| |
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| T |
38090602 |
a |
38090602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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