View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_high_4 (Length: 340)
Name: NF10283_high_4
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 47475589 - 47475292
Alignment:
| Q |
23 |
gtataaatcttctctctttgaacattggctaggtcatgatcatgcggcaatattcataatatctatgaaacttctaaaaactggctccaactacagtcga |
122 |
Q |
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| T |
47475589 |
gtataaatcttctctctttgaacattggctaggtcatgatcatgcggcaatattcataatatctattaa-cttctaaaaactggctcccactacagtcga |
47475491 |
T |
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| Q |
123 |
agtcataacactaaactattgccacaaagtgaaaataccaccgggtcaacttggatttgaatctagtttggacttctttttgaaattcttttcatagata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47475490 |
agtcataacactaaactattgccacaaagtgaaaataccaccgggtcaacttggatttgaatctagtttggacttctttttgaaattcttttcatagata |
47475391 |
T |
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| Q |
223 |
ttgcccctttgtgatatcattccaaaggacatgatactaaaatctcatgcgatgtgttgattacttgcttccttattctttactcttttttgtattctc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47475390 |
ttgcccctttgtgatatcattccaaaggacatgatactaaaatctcatgcgatgtgttgattacttgcttccttattctttactcttttttgtattctc |
47475292 |
T |
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