View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10283_high_6 (Length: 258)
Name: NF10283_high_6
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4736440 - 4736574
Alignment:
| Q |
1 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4736440 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatg |
4736539 |
T |
|
| Q |
101 |
aattttataatatgatgtaataataagaataagtt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4736540 |
aattttataatatgatgtaataataagaataagtt |
4736574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 4736557 - 4736623
Alignment:
| Q |
176 |
taataataagaataagtttcctttattgtccttaatacggagaagatttgaaatgcaatgaaaaaag |
242 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4736557 |
taataataagaataagtttcctttgttgtccttaatacggagaagatttgaaatgcaatgaaaaaag |
4736623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4744951 - 4745025
Alignment:
| Q |
1 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcc |
75 |
Q |
| |
|
||||||||||||| || | ||||||||| ||| | | |||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4744951 |
aggctacatgaagttgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcc |
4745025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University