View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10283_high_8 (Length: 250)
Name: NF10283_high_8
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41553642 - 41553398
Alignment:
| Q |
1 |
aaatttcaaataaaccaactataggctaattgcaaaactataaatctttcgacttttaatagatattattatgtcaatttcattatattgtaccttttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41553642 |
aaatttcaaataaaccaactataggctaattgcaaaactataaatctttcgacttttaatagatattattatgtcaatttcattatattgtaccttttta |
41553543 |
T |
|
| Q |
101 |
tcaatgtctgacattttcttccaagcatcaatagccatttgttttctgacaccaatgtcccgatgatcagctttcagtcgagcacattccttcttgagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41553542 |
tcaatgtctgacattttcttccaagcatcaatagccatttgttttctgacaccaatgtcccgatgatcagctttcagtcgagcacattccttcttgagga |
41553443 |
T |
|
| Q |
201 |
atatttggcaaccactttggttccttggagcacctctctgcttct |
245 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
41553442 |
atatttggtaaccactttggttccttggagcacctttctgtttct |
41553398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 34257018 - 34256855
Alignment:
| Q |
46 |
ctttcgacttttaatagatattattatgtcaatttcattatattgtacctttttatcaatgtctgacattttcttccaagcatcaatagccattt----- |
140 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||| || | |||| ||| ||| ||||||||| || |||||||||||||||||||| | |
|
|
| T |
34257018 |
ctttcgacttttaatcgatattattatctcaaattcatt-tactatacccgtttctcattgtctgacaacttattccaagcatcaatagccatgtctatg |
34256920 |
T |
|
| Q |
141 |
-gttttctgacaccaatgtcccgatgatcagctttcagtcgagcacattccttcttgaggaatat |
204 |
Q |
| |
|
|||||| |||| | |||| |||||| |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
34256919 |
atttttcttccacctacgtccggatgattagctttaagtcgagcacattcctgcttgaggaatat |
34256855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 34257334 - 34257190
Alignment:
| Q |
62 |
gatattattatgtcaatttcattatattgtacctttttatcaatgtctgacattttcttccaagcatcaatagccatttgttttctgacaccaatgtccc |
161 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||| || | | ||||| |||||||||||||||||||| | |||||||| |||| | |
|
|
| T |
34257334 |
gatattattatgtcaatttcatt-tatcgtaccagtttttccaagggggacatcatcttccaagcatcaatagccttgagttttctgtcaccttgaaact |
34257236 |
T |
|
| Q |
162 |
gatgatcagctttcagtcgagcacattccttcttgaggaatatttg |
207 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
34257235 |
gatgatcagctttcagtctagcgcattcatgcttgaggaatatttg |
34257190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University