View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_1 (Length: 547)
Name: NF10283_low_1
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 150 - 520
Target Start/End: Complemental strand, 8930966 - 8930583
Alignment:
| Q |
150 |
aaatgttttagctaattaaaagtgatgcttaactgaaaacacgg-tgaattcgtgtagtttgagatttggtatgttgagtaaactgactttggtgttgtt |
248 |
Q |
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| T |
8930966 |
aaatgttttagctaattaaaagtgatgcttaactgaaaacacgggtgaattcgtgtagtttgagatttggtatgttgagtaaagtgactttggtgttgct |
8930867 |
T |
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| Q |
249 |
ggccgggaaaacaggtgttaatggatatgtgttttatgtaagatagtgttcggtaact-----------acttcgtgaggatatctctcgagaaacatag |
337 |
Q |
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| T |
8930866 |
ggccgggaaaacaggtgttaatggatatgtgttttatgtaagatagtgttcggtaactaattcgtgataacttcgtgaggatatctctcgagaaacatag |
8930767 |
T |
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| Q |
338 |
caatctctggacacatatacaccatggaagattgtttttaaggtcctaaagcacaatgaagaaatatattcctttagtataatattttagcttcc-nnnn |
436 |
Q |
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| T |
8930766 |
caatctctggacacatatacaccatggaagattgtttttaaggtcctaaagcacaatgaagaaatatattcctttagtataatattttagcttccaaaaa |
8930667 |
T |
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| Q |
437 |
nnnnnnttgttgcagtatcaattataggtacaccatttggatcaactccaatgaggtaaattgttacaaaaatattttcctata |
520 |
Q |
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| T |
8930666 |
aaaaaattgttgcagtatcaattataggtacaccatttggatcaactccaatgaggtaaattgttacaaaaatattttcctata |
8930583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 447 - 529
Target Start/End: Complemental strand, 8955141 - 8955060
Alignment:
| Q |
447 |
tgcagtatcaattataggtacaccatttggatcaactccaatgaggtaaattgttacaaaaatattttcctatatagcttgat |
529 |
Q |
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| T |
8955141 |
tgcagtaccaattataggtacaccatttggatcaactacaatgaggtaaattattac-aaaatatttttctacatagcttgat |
8955060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 8941246 - 8941192
Alignment:
| Q |
447 |
tgcagtatcaattataggtacaccatttggatcaactccaatgaggtaaattgtt |
501 |
Q |
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| T |
8941246 |
tgcagtaccaattataggtacaccatttggatcaactccaatgaggtcaattgtt |
8941192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 8955212 - 8955175
Alignment:
| Q |
363 |
ggaagattgtttttaaggtcctaaagcacaatgaagaa |
400 |
Q |
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| T |
8955212 |
ggaagattgcttttaaggtactaaagcacaatgaagaa |
8955175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 11307406 - 11307271
Alignment:
| Q |
182 |
ctgaaaacac-ggtgaattcgtgtagtttgagatttggtatgttgagtaaactgactttggtgttgttggc-cgggaaaacaggtgttaatggatatgtg |
279 |
Q |
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| T |
11307406 |
ctgaaaacacaggtgaattggtgtagtttgagggatggtatgttgagtaaactcacttttgtgttgctggcgcggaaaataaggtggcaatagatgtgtg |
11307307 |
T |
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| Q |
280 |
ttttatgtaagatagtgttcggtaactacttcgtga |
315 |
Q |
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| T |
11307306 |
ttttatgtgatatagtattgagtaactagttcgtga |
11307271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 2895588 - 2895516
Alignment:
| Q |
216 |
tggtatgttgagtaaactgactttggtgttgttggccgggaaaac-aggtgttaatggatatgtgttttatgt |
287 |
Q |
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| T |
2895588 |
tggtctgttgagtaaactgacttttgtgttgccggcttggaaaacaaggtgggaatggatgtgtgttttatgt |
2895516 |
T |
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