View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_14 (Length: 227)
Name: NF10283_low_14
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_14 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 12540441 - 12540667
Alignment:
| Q |
1 |
ggaacaaaagcatggtttatgtgagattggagaaactaaaataccctttcactttttgagcgaggcggagcaggaggaagatgaatttgaggatatgtat |
100 |
Q |
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| T |
12540441 |
ggaacaaaataatggtttatgtgagattggagaaactaaaataccctttcactttttgagcgaggcggagcaggaggaagatgaatttgaggatatgtat |
12540540 |
T |
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| Q |
101 |
gatgcgatcataatcacactctgcatggaaagacaaataaacgaagcctatgatttattttctgaaatgattgttaagaagaatatcataccttgtaatg |
200 |
Q |
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| T |
12540541 |
gatgcgatcataatcacactctgcatggaaagacatataaacgaagcctatgatttattttctgaaatgattgttaagaagaagatcataccttgtaatg |
12540640 |
T |
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| Q |
201 |
acatatattgctgtctagtctatggct |
227 |
Q |
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| T |
12540641 |
acatatattgctgtctagtctatggct |
12540667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 14508878 - 14508834
Alignment:
| Q |
138 |
taaacgaagcctatgatttattttctgaaatgattgttaagaaga |
182 |
Q |
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| T |
14508878 |
taaaccaagcctatgatttatattctgaaatgattgttaagaaga |
14508834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 12535546 - 12535504
Alignment:
| Q |
138 |
taaacgaagcctatgatttattttctgaaatgattgttaagaa |
180 |
Q |
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| T |
12535546 |
taaacgaagcctatgctttattttctgaaatagttgttaagaa |
12535504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 12533056 - 12533024
Alignment:
| Q |
150 |
atgatttattttctgaaatgattgttaagaaga |
182 |
Q |
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| T |
12533056 |
atgatttgttttctgaaatgattgttaagaaga |
12533024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 1717907 - 1717949
Alignment:
| Q |
138 |
taaacgaagcctatgatttattttctgaaatgattgttaagaa |
180 |
Q |
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| T |
1717907 |
taaaccaagcctatgatttatattctgaaatgattgtaaagaa |
1717949 |
T |
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