View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_3 (Length: 451)
Name: NF10283_low_3
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 49691046 - 49690615
Alignment:
| Q |
1 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttcc |
100 |
Q |
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|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49691046 |
agaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcataaaaaaa-gttcc |
49690948 |
T |
|
| Q |
101 |
aaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
200 |
Q |
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|||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690947 |
aaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
49690848 |
T |
|
| Q |
201 |
gggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattat |
300 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49690847 |
gtgttgccaatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcatagcagttttgttgagattat |
49690748 |
T |
|
| Q |
301 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||| |
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| T |
49690747 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggaca |
49690648 |
T |
|
| Q |
401 |
atcatcactgtgtccatttcctttcctagttaa |
433 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
49690647 |
atcaccactgtgtccatttcctttcctagttaa |
49690615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 49679412 - 49678988
Alignment:
| Q |
1 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
49679412 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagtttttcataaaaaaaagttcc |
49679313 |
T |
|
| Q |
101 |
aaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679312 |
aaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatggaaata |
49679213 |
T |
|
| Q |
201 |
gggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattat |
300 |
Q |
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| |||||||||||||| | |||||||||| ||| ||||||| ||||||||||| | |||| |||||||||| | |||||||||||||||||||||||||| |
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| T |
49679212 |
gtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcatagcagttttgttgagattat |
49679113 |
T |
|
| Q |
301 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggaca |
400 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
49679112 |
cacaaccttgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtatttaatcaa--------ttccacaatcaaatgattctggaca |
49679021 |
T |
|
| Q |
401 |
atcatcactgtgtccatttcctttcctagttaa |
433 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
49679020 |
atcatcactgtgtccatttcctttcctagttaa |
49678988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 433
Target Start/End: Complemental strand, 49686774 - 49686355
Alignment:
| Q |
4 |
actatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttccaaa |
103 |
Q |
| |
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||||||| ||||||||||| |||| || | | || |||||||| |||||||| ||||||||||||||||||||| || |||||| |||||||| |
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| T |
49686774 |
actatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaa-gttccaaa |
49686676 |
T |
|
| Q |
104 |
aggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaataggg |
203 |
Q |
| |
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|||||||| ||||||||| || |||| ||| ||| || ||||| ||||||||||||| |||||||||||||| ||| | |||| ||||||||||| | |
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| T |
49686675 |
aggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtg |
49686579 |
T |
|
| Q |
204 |
ttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattatcac |
303 |
Q |
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||| | || | ||| | ||| ||| ||||||| ||| ||||||| | |||| | |||||||| | ||| |||||||||||||||||| |||| |
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| T |
49686578 |
ttg------ggccgctcatttttaatgtttgtaacttgaaagtgttttcctcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcac |
49686485 |
T |
|
| Q |
304 |
aaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatc |
403 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||||| |||||||||||||||||||||||||||| |
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| T |
49686484 |
aaccttgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatc |
49686385 |
T |
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| Q |
404 |
atcactgtgtccatttcctttcctagttaa |
433 |
Q |
| |
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||||||||||||||||||||| |||||||| |
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| T |
49686384 |
atcactgtgtccatttcctttactagttaa |
49686355 |
T |
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