View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_4 (Length: 424)
Name: NF10283_low_4
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 5522933 - 5522525
Alignment:
| Q |
1 |
ttgaagattaatctttggagattacataccatgctctcggactccatgtgcaaaactgtcaccctttcttccaaacatgttcatcttagtcagaactgaa |
100 |
Q |
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| T |
5522933 |
ttgaagattaatctttggagattacataccatgctcttggactccatgtgcaaaactgtcaccctttcttccaaacatgttcatcttagtcagaactgaa |
5522834 |
T |
|
| Q |
101 |
tttagtttacctgaaaatataaaaatgaccatgataaatgaaattagtttttaaaagaagtattcatgaattacagttttgttaatgtaggggtgtcaat |
200 |
Q |
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| T |
5522833 |
tttagtttacctgaaaatataaaaatgaccatgatcaatgaaattagtttttaaaagaagtattcatgaattacagttttgttaatgtaggggtgtcaat |
5522734 |
T |
|
| Q |
201 |
accttgcctagattttgcaatggatttgctgtatacgccagaagaatccggcaagtatctttttgacgacttcccaaccgaacaagttgagctaatagaa |
300 |
Q |
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| T |
5522733 |
accttgcctagattttgcaatggatttgctgtatacgctagaagaatccggcaaatatctttttgatgacttcccaaccgaacaagttgagctaatagaa |
5522634 |
T |
|
| Q |
301 |
attccattaagcagttcatgaaggaatgaagtcttcatttttgttattatcttgagttggagccattgaggatgtttttatgcaa-aaaactagcttgtg |
399 |
Q |
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| T |
5522633 |
attccattaagcagttcatgaaggaatgaagtcttcatttttgttattatcttgagttggagcctttgaggatgtttttatgcaaaaaaactagcttgtg |
5522534 |
T |
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| Q |
400 |
agaagtatt |
408 |
Q |
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| T |
5522533 |
agaagtatt |
5522525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 51754027 - 51754352
Alignment:
| Q |
19 |
agattacataccatgctctcggactccatgtgcaaaactgtcaccctttcttccaaacatgttcatcttagtcagaactgaatttagtttacctgaaaat |
118 |
Q |
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| T |
51754027 |
agattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcatcttagtcagaactgaatttaatttacctgaaaat |
51754126 |
T |
|
| Q |
119 |
ataaaaatgaccatgataaatgaaattagtt---tttaaaagaagta-ttcatgaattacagttttgttaatgtaggggtgtcaataccttgcctagatt |
214 |
Q |
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| T |
51754127 |
agaaaaatgaccatgatcaataaactaatttaaatttaaaagaagtatttgatgaaatatagatttagtaatgtagatgtgtc-ctacccttatttgatt |
51754225 |
T |
|
| Q |
215 |
ttgcaatggatttgctgtatacgccagaagaatccggcaagtatctttttgacgacttcccaaccgaacaagttgagctaatagaaattccattaagcag |
314 |
Q |
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| T |
51754226 |
ttgtgatagacttgcagtattttccagtagaatcaggcaagtatctccttgaggatttcccagccggataacttgagctaatagagattccattaagtag |
51754325 |
T |
|
| Q |
315 |
ttcatgaaggaatgaagtcttcatttt |
341 |
Q |
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|||||||| |||||||| |||||||| |
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| T |
51754326 |
ctcatgaagaaatgaagtattcatttt |
51754352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 51768927 - 51768978
Alignment:
| Q |
285 |
agttgagctaatagaaattccattaagcagttcatgaaggaatgaagtcttc |
336 |
Q |
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| T |
51768927 |
agttgaggtgatagaaattccattaagtagctcatgaaggaatgatgtcttc |
51768978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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