View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_5 (Length: 387)
Name: NF10283_low_5
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 137 - 371
Target Start/End: Original strand, 16642994 - 16643233
Alignment:
| Q |
137 |
tcaactcaattgatctgtaattctttattgaaattggcaatcgacaaaagcaatgnnnnnnncaaaactgaaaattccagaacagaagaataataaaggc |
236 |
Q |
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| T |
16642994 |
tcaacgcaattgatctgtaattctttattgaaattggcaatcgacaaaagcaatgaaaaaaacaaaactgaaaattccagaacagaagaataataaaagc |
16643093 |
T |
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| Q |
237 |
tttgaagaatcacttcaaacttaaaattaataaacaaaataaacatcgctgaaactgat-----attgcatccctaaatactaattttgttatttttcaa |
331 |
Q |
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| T |
16643094 |
tttgaagaatcacttcaaacttaaaattaataaacaaagtaaacatggctgaaactgatattgcattgcatccctaaatactaattttgttatttttcaa |
16643193 |
T |
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| Q |
332 |
cttctgtgatattcagcatcttcaatttaattttttattt |
371 |
Q |
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| T |
16643194 |
cttctgtgatattcagcatcttcaatttaattttttattt |
16643233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 137 - 371
Target Start/End: Original strand, 17617355 - 17617594
Alignment:
| Q |
137 |
tcaactcaattgatctgtaattctttattgaaattggcaatcgacaaaagcaatgnnnnnnncaaaactgaaaattccagaacagaagaataataaaggc |
236 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
17617355 |
tcaacgcaattgatctgtaattctttattgaaattggcaatcgacaaaagcaatgaaaaaaacaaaactgaaaattccagaacagaagaataataaaagc |
17617454 |
T |
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| Q |
237 |
tttgaagaatcacttcaaacttaaaattaataaacaaaataaacatcgctgaaactgat-----attgcatccctaaatactaattttgttatttttcaa |
331 |
Q |
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| T |
17617455 |
tttgaagaatcacttcaaacttaaaattaataaacaaagtaaacatggctgaaactgatattgcattgcatccctaaatactaattttgttatttttcaa |
17617554 |
T |
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| Q |
332 |
cttctgtgatattcagcatcttcaatttaattttttattt |
371 |
Q |
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| T |
17617555 |
cttctgtgatattcagcatcttcaatttaattttttattt |
17617594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 16642885 - 16642937
Alignment:
| Q |
29 |
caacatttcccgagcgagttcaccccacatgacattttcagcatctctgaatg |
81 |
Q |
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| T |
16642885 |
caacatttcccgagcgagttcaccccaaatgacattttcagcatatttgaatg |
16642937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 17617246 - 17617298
Alignment:
| Q |
29 |
caacatttcccgagcgagttcaccccacatgacattttcagcatctctgaatg |
81 |
Q |
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| T |
17617246 |
caacatttcccgagcgagttcaccccaaatgacattttcagcatatttgaatg |
17617298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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