View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_8 (Length: 295)
Name: NF10283_low_8
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_8 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 14580265 - 14580559
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
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|||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580265 |
caaaacaagaacacatgtaccaatagacgaacgccagaaaccaatcaagaatttcatagcggagtaaatccaaacattggttgaaaagattatgagcatg |
14580364 |
T |
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| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14580365 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagatgaatcagctaatgctgcaagaaaaaaagaaccaagaagacaac |
14580464 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580465 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
14580559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 14543322 - 14543028
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
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|||||||||||||||||| || |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
14543322 |
caaaacaagaacacatgtacctatagacgaacgccagaaaccaatcaagaatttcattgctgagtaaatccaaacattggttgaaaagattatgagcatg |
14543223 |
T |
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| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14543222 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctgccaatagatgaatcagctaatgctgcaagaaaaaaagaaccaagaagacaac |
14543123 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14543122 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
14543028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 35622394 - 35622688
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
| |
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|||||||||||||||||| ||||| || || ||||| |||||||||||||||||||| || |||||||||||||||||||| || |||||||| |||||| |
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| T |
35622394 |
caaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggtggataagattataagcatg |
35622493 |
T |
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| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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||||||||||||||||||||||||||||| ||||| | ||||| | ||| | |||||| ||||||||||||||||| || |||||||||||||||| | |
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| T |
35622494 |
gaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaagaaaggaagaaccaagaagacagc |
35622593 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
295 |
Q |
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|| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
35622594 |
ctgtgaagaaagaagattgtggtaaacctatgacgaatgtgctagcacattcaagattccaataagaaatgattgtgtttgaagagtgtgtgtcc |
35622688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 34263476 - 34263770
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
| |
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||||||||||||||| || | || || |||||||| ||||| |||||||||||||| || ||||||||||||||||| || ||||||||||| || ||| |
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| T |
34263476 |
caaaacaagaacacacgtggcaatggatgaacgccagaaaccgatcaagaatttcaaggcagagtaaatccaaacattagtggaaaagattatcagaatg |
34263575 |
T |
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| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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|||||||||||||| ||||||||||||| || ||||||||||| ||||| ||| |||||||||||||||||||| || || | |||| || ||||| |
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| T |
34263576 |
gaagttattgacatcagaacacaagaaaagaataacatgttttttcgaccaaaagatgaatcagctaatgctgcaagaaaggaaaagccaaaaaaacaac |
34263675 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
295 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34263676 |
ctatgaagaaagaagattgtggtaaacctgtgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaagggtgtgtgtcc |
34263770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 10404329 - 10404054
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||| || || | |||||| ||||| |||||||||||||||||||||||||| | |||| || |
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| T |
10404329 |
caaaacaagaacacatgtaccgatagacgaacgccaaaatccgataaggaatttgaaagccgagtaaatccaaacattggttgaaaacacaatgatgatt |
10404230 |
T |
|
| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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|| ||||||||||| || | |||||| | || | |||||||||||| |||| || | ||||||||| | || | ||||||||||| || |||| |
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| T |
10404229 |
gaggttattgacatcgataaacaagagataatcaacatgttttttcttccaagggatgtatcagctaaagtagctaatgcaaaagaaccaattaggcaac |
10404130 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgagaaatgattgt |
276 |
Q |
| |
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|||| ||||| ||||||||||||||||| |||||||| | || |||||||||||| |||| ||||| |||||||| |
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| T |
10404129 |
ctatgaagaatgaagattgtggtaaacctgtgatgaagctacttgcacattcaagactccattgagatatgattgt |
10404054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 10378340 - 10378074
Alignment:
| Q |
1 |
caaaacaagaacacatgttccgatagacgaacgccaaaaaccaatcaagaatttcaaagcggagtaaatccaaacattggttgaaaagattatgagcatg |
100 |
Q |
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||||||||||||||| ||||| || ||||||||| |||| |||||||||||||| ||| | || ||||||||||||||||| || || | ||||| || |
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| T |
10378340 |
caaaacaagaacacaagttccaatcgacgaacgcaaaaacccaatcaagaatttaaaaacagaataaatccaaacattggtagagaaaacaatgagaata |
10378241 |
T |
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| Q |
101 |
gaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagacgaatcagctaatgctgcaaggaaaaaagaaccaagaagacaac |
200 |
Q |
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|||| ||| |||||||| | |||||| | | |||||||| |||||||||| || | ||||||||| | ||| || | ||| ||||| | |||||||| |
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| T |
10378240 |
gaagctatagacattgataaacaagacataacaagcatgttctttctaccaagtgatgtatcagctaaagttgctagaagaaacgaaccgaaaagacaac |
10378141 |
T |
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| Q |
201 |
ctataaagaaagaagattgtggtaaaccagtgatgaatgtgctagcacattcaagattccaatgaga |
267 |
Q |
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| T |
10378140 |
caatgaagaacgacgattgaggtaaacctgttacaaaactactagcacattcaagactccattgaga |
10378074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 37600052 - 37599988
Alignment:
| Q |
231 |
tgatgaatgtgctagcacattcaagattccaatgagaaatgattgtgtttgaaggatgtgtgtcc |
295 |
Q |
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||||||||||| || |||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
37600052 |
tgatgaatgtgttaacacattcaagattccagttagaaatgattgtgtttgaagggtgtgtgtcc |
37599988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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