View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10283_low_9 (Length: 277)
Name: NF10283_low_9
Description: NF10283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10283_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 25690137 - 25690385
Alignment:
| Q |
18 |
ctatgtacattttaaagatcacacttgtattttcattgtgatcatctattataaaataaaatcaattgaatgaatgacaaagaggttttaagcagtgaac |
117 |
Q |
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| T |
25690137 |
ctatgtacattttaaagatcacacttgtattttcattgtgatcatctattataaaataaaatcaattgaatgaatgacaaagaggttttaagtagtgaac |
25690236 |
T |
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| Q |
118 |
aaaagattctgcctttgtgtgctg--acacagtttggcaaatataatctgagttgtatgttaaacgtctggttcatataatttgagttctctatttttat |
215 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25690237 |
aaaagattctgcctctgtgtgctgacacacagtttggcaaatataatctgagttgtatgttaaacgtccggttcatataatttgagttctctatttttat |
25690336 |
T |
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| Q |
216 |
acattgcaatctttctataaacgtggtcttctaagggtttgacacattt |
264 |
Q |
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| T |
25690337 |
acattgcaatcttcctataaacgtggtcttctaagggtttgacacattt |
25690385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 5588707 - 5588635
Alignment:
| Q |
32 |
aagatcacacttgtattttcattgtgatcatctattataaaataaaatcaattgaatgaatgacaaagaggttt |
105 |
Q |
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| T |
5588707 |
aagatcaaacttgtattttcattgtgatcat-tattataaaataaaatcaattgaatgaatgacagagaggttt |
5588635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 48696845 - 48696800
Alignment:
| Q |
39 |
cacttgtattttcattgtgatcatctattataaaataaaatcaatt |
84 |
Q |
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| T |
48696845 |
cacttttattttcattgtgatcatctattataaaataaaatcaatt |
48696800 |
T |
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