View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10284_high_1 (Length: 565)

Name: NF10284_high_1
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10284_high_1
NF10284_high_1
[»] chr1 (12 HSPs)
chr1 (1-549)||(12154001-12154549)
chr1 (2-429)||(12160317-12160724)
chr1 (2-229)||(12153391-12153616)
chr1 (18-157)||(12160137-12160276)
chr1 (2-229)||(12153596-12153818)
chr1 (29-146)||(12153826-12153943)
chr1 (31-229)||(12159738-12159932)
chr1 (29-229)||(12159537-12159728)
chr1 (2-213)||(12159912-12160124)
chr1 (62-150)||(12153261-12153349)
chr1 (73-229)||(12159377-12159529)
chr1 (181-229)||(12160289-12160337)


Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 12154001 - 12154549
Alignment:
Q  1 aagaaatgaataaagtataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12154001 aagaaattaataaagtataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaatccccatagaaaaggttga 12154100  T
Q  101 aagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgt 200  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12154101 aagtggggcatatgaaatgaataaaattagagaaagcacataaaggtaactttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgt 12154200  T
Q  201 gattcaatagaaaagagtaaaggtataaacaattttaccaatatgggttggtccaatagcatgatgagaagagggaaaaaatcgtagattatgagagtag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12154201 gattcaatagaaaagagtaaaggtataaacaattttaccaatatgggttggtccaatagcgtgatgagaagagggaaaaaatcgtagattatgagagtag 12154300  T
Q  301 ttgctgaaactagaagcatgcgtggatgaaaaattaccaatatgtgttggtccaacaattttaaacaggtcccacataaagtggtgggtccatctataac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12154301 ttgctgaaactagaagcatgcgtggatgaaaaattaccaatatgggttggtccaacaattttaaacaggtcccacataaagtggtgggtccatctataac 12154400  T
Q  401 gtgtcattagaggtggttttatgaaagtattgaaactagaattaaggcctatataacctcaatcttctttgttcttttttcattctatgtctctgatcct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12154401 gtgtcattagaggtggttttatgaaagtattgaaactagaattaaggcctatataacctcaatcttctttgttcttttttcattctatgtctctcatcct 12154500  T
Q  501 aaatatgagtcgttctcatgagacatcttttatttctctccctactatt 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12154501 aaatatgagtcgttctcatgagacatcttttatttctctccctactatt 12154549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 2 - 429
Target Start/End: Original strand, 12160317 - 12160724
Alignment:
Q  2 agaaatgaataaa-gtataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttga 100  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||| |||||||||| |||||||||    
T  12160317 agaaaagaataaatgtataaatatattgtgattccttgatgaggagtgggaaaagattaatagtggctctacaaaccaccacccccataggaaaggttga 12160416  T
Q  101 aagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgt 200  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||| |||     | |||| |||| ||||||| |||||  |||||||| |||||||||    
T  12160417 aagtggggcacatgaaacgaataaaattagagaaaacacataaaggaagc----gtgattagaacatggaaaaatctacaacaaggaatatatgtagcgt 12160512  T
Q  201 gattcaatagaaaagagtaaaggtataaacaattttaccaatatgggttggtccaatagcatgatgagaagagggaaaaaatcgtagattatgagagtag 300  Q
    ||||||||||| | || ||||||||||||    | ||||       ||      |||| |||||||| |||||| ||| |||||||||||  || |||||    
T  12160513 gattcaatagataggaataaaggtataaa----tgtacc-------gt------aataccatgatgaaaagaggtaaacaatcgtagattccgaaagtag 12160595  T
Q  301 ttgctgaaactagaagcatgcgtggatgaaaaattaccaatatgtgttggtccaacaattttaaacaggtcccacataaagtggtgggtccatctataac 400  Q
     ||||||||||| ||||||| || ||||| ||||||| |||||| ||||||| |||| ||||||| ||||||||||||||| |||||||| |||||||||    
T  12160596 ctgctgaaactaaaagcatgtgttgatgagaaattactaatatgggttggtcaaacacttttaaataggtcccacataaaggggtgggtcgatctataac 12160695  T
Q  401 gtgtcattagaggtggttttatgaaagta 429  Q
     ||||| || |||||||||||| ||||||    
T  12160696 ctgtcactataggtggttttataaaagta 12160724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 12153391 - 12153616
Alignment:
Q  2 agaaatgaataaa-gtataaatatattgtgattccttgatgagaaatg--ggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggtt 98  Q
    ||||||||||||| |||||||| |||||||||| | ||||||||||||  ||||||||||||| ||| |||||||||||||| | |||||||||||||||    
T  12153391 agaaatgaataaatgtataaatgtattgtgatttcgtgatgagaaatgtgggaaaagattaaa-gtgtctctaaaaaccacaccgcccatagaaaaggtt 12153489  T
Q  99 gaaagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagc 198  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||     | |||| ||||||||||||||| ||||||||||||||||||||    
T  12153490 gaaagtggggcacatgaaatgaagaaaattatagaaagcacataaaggtagc----gtgattagaacagggaaaaacctgcagaaaggaatagatgtagc 12153585  T
Q  199 gtgattcaatagaaaagagtaaaggtataaa 229  Q
    ||||||||||||||| || ||||||||||||    
T  12153586 gtgattcaatagaaaggaataaaggtataaa 12153616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 12160137 - 12160276
Alignment:
Q  18 taaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttgaaagtggggcacatgaaa 117  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  12160137 taaatatatcgtgattccatgatgagaagtgggaaaagattaaaagtggctctaaaaaccaccaccctcatataaaaggttgaaagtggggcacatgaaa 12160236  T
Q  118 agaataaaattagagaaagcacataaaggtagctttatta 157  Q
     |||||||||||||||||||||||||||||| ||| ||||    
T  12160237 tgaataaaattagagaaagcacataaaggtaacttgatta 12160276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 12153596 - 12153818
Alignment:
Q  2 agaaatgaataaag-tataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttga 100  Q
    ||||| |||||||| ||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||| |||||| | | |||||||||||||||||    
T  12153596 agaaaggaataaaggtataaatgtattgtgattctgtgatgagaagtgggaaaagattaaaagtggctctacaaaccatagctcccatagaaaaggttga 12153695  T
Q  101 aagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgt 200  Q
    |  ||| |||||||||| ||||||||||||| |||||||||||||||||      | |||| || |||||||||||  ||||||||| ||||||||  ||    
T  12153696 atttggagcacatgaaatgaataaaattagataaagcacataaaggtag------tgattagaatagggaaaaacccgcagaaaggactagatgtaatgt 12153789  T
Q  201 gattcaatagaaaagagtaaaggtataaa 229  Q
    ||||||||||||| || ||||||||||||    
T  12153790 gattcaatagaaaggaataaaggtataaa 12153818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 12153826 - 12153943
Alignment:
Q  29 tgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttgaaagtggggcacatgaaaagaataaaatt 128  Q
    |||||||||||||||||||| |||||||||||||| | ||| | ||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||    
T  12153826 tgattccttgatgagaaatgtgaaaagattaaaagcgcctcgacaaaccaccacccccatagaaaaggttgaacgtagggcacatgaaatgaataaaatt 12153925  T
Q  129 agagaaagcacataaagg 146  Q
    ||||||||||||||||||    
T  12153926 agagaaagcacataaagg 12153943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 12159738 - 12159932
Alignment:
Q  31 attccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttgaaagtggggcacatgaaaagaataaaattag 130  Q
    |||| ||||||| || |||||||||||||||| |||||||| ||| ||| ||||| |||||||| ||||||||||||||| |  ||| ||||||||||||    
T  12159738 attcgttgatgataagtgggaaaagattaaaaatggctctacaaatcaccacccctatagaaaatgttgaaagtggggcaaacaaaatgaataaaattag 12159837  T
Q  131 agaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataaa 229  Q
    ||||| ||||||||||||||     |  ||| |||| | |||||||| || ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  12159838 agaaaccacataaaggtagc----gtggttagaacatgcaaaaacctgcataaaggaatagatgtagcgtgattaaatagaaaggaataaaggtataaa 12159932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 12159537 - 12159728
Alignment:
Q  29 tgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttgaaagtggggcacatgaaaagaataaaatt 128  Q
    |||||||||||||| || | ||||||| ||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||||||  |||||||||    
T  12159537 tgattccttgatgaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaatagaaaaggttgaaagtggggcacatgaaattaataaaatt 12159636  T
Q  129 agagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataa 228  Q
    ||| |||| ||| ||| ||||      | ||||||||| ||||||||||     |||||||||||||||||| |||||||||||| || || ||||||||    
T  12159637 agaaaaagaacacaaaagtag----ggtgattaaaaca-ggaaaaacct----gaaggaatagatgtagcgtaattcaatagaaaggaatacaggtataa 12159727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 12159912 - 12160124
Alignment:
Q  2 agaaatgaataaag-tataaatatattgtgattccttgatgagaaatgggaaaagattaaaagtggctctaaaaaccacaacccccatagaaaaggttga 100  Q
    ||||| |||||||| ||||||| ||  |||||||||||||||||| | | | |||||||||||| ||| || |||| |||||||   || ||||||||||    
T  12159912 agaaaggaataaaggtataaatgtaccgtgattccttgatgagaagttgtacaagattaaaagttgctttacaaacaacaacccttgtaaaaaaggttga 12160011  T
Q  101 aagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgt 200  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||  |    | || | || |||||||||| | |||||||||||| |||| ||||    
T  12160012 aagtggggcacatgaaatgaataaaattagataaagcacattaaggtacgtagcgtgataagaatagggaaaaacttgcagaaaggaatatatgtcgcgt 12160111  T
Q  201 gattcaatagaaa 213  Q
    | |||||||||||    
T  12160112 ggttcaatagaaa 12160124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 12153261 - 12153349
Alignment:
Q  62 agtggctctaaaaaccacaacccccatagaaaaggttgaaagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagc 150  Q
    ||||||||||||||||||| | |||||||||||| |||||| ||||| ||| |||| ||||||||||||| ||| ||||||||||||||    
T  12153261 agtggctctaaaaaccacagcgcccatagaaaagattgaaaatggggtacaagaaatgaataaaattagataaaacacataaaggtagc 12153349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 12159377 - 12159529
Alignment:
Q  73 aaaccacaacccccatagaaaaggttgaaagtggggcacatgaaaagaataaaattagagaaagcacataaaggtagctttattaattaaaacagggaaa 172  Q
    |||||||||||||| ||||||| | ||||||||| | |||||||| ||||||||||||||||||||||| ||  | || | ||||  ||||  | |||||    
T  12159377 aaaccacaacccccgtagaaaaagctgaaagtggagtacatgaaatgaataaaattagagaaagcacatgaaatttgcgtgatta--taaa--atggaaa 12159472  T
Q  173 aacctacagaaaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataaa 229  Q
    ||| |  |||||  |||| |||||||||||||||||||||| || ||||||||||||    
T  12159473 aacgtgtagaaaaaaatatatgtagcgtgattcaatagaaacgaataaaggtataaa 12159529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 12160289 - 12160337
Alignment:
Q  181 gaaaggaatagatgtagcgtgattcaatagaaaagagtaaaggtataaa 229  Q
    |||||||||| | |||| |||||||||||||||||| |||| |||||||    
T  12160289 gaaaggaatatacgtagtgtgattcaatagaaaagaataaatgtataaa 12160337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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