View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10284_low_10 (Length: 269)
Name: NF10284_low_10
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10284_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 40033521 - 40033769
Alignment:
| Q |
1 |
aaccagctttgtgttgaagccagaaatcatggcagtatattatagggggctcagagagtggcggtgcatgcaaaaacaaagggcaattccgtcaaaataa |
100 |
Q |
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| T |
40033521 |
aaccagctttgtgttgaagccagaaatcatggcagtatattatagggggctcagagagtggcggtgcatgcaaaaacaaagggcaattccgtcaaaataa |
40033620 |
T |
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| Q |
101 |
agaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttctctaccggttctagggtttctgagtaacttcattca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40033621 |
agaaaaacgacgctgcaccatataaatcatgtaaccctgtttattctctcaccatttcattttc---------tctagggtttctgagtaacttcattca |
40033711 |
T |
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| Q |
201 |
aggtaaatttctttcgcacaatttagggtacaatttcatttctatttgatgtgttctt |
258 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40033712 |
aggtaaatttctttctcacaatttagggtacaatttcgtttctatttgatgtgttctt |
40033769 |
T |
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