View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10284_low_12 (Length: 257)
Name: NF10284_low_12
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10284_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 8372434 - 8372269
Alignment:
| Q |
76 |
ttctttctaataacccaaactattccatcgaagttgagagcagcagacttcaatatttagggtatacactgtgtcactcacaccctccttatcaagtgtg |
175 |
Q |
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| T |
8372434 |
ttctttctaataacccaaactagtccatcgaagttgagagtagcagacttcaatatttagggtatacact-tgtcactcacaccctccttatcaagtgtg |
8372336 |
T |
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| Q |
176 |
tggtagacagacatggccacaatgttatttattgctggtatgtactttacaaatctttcaactctat |
242 |
Q |
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| T |
8372335 |
tggtagacattcatggccacaatgttatttattgctggtatgtactttacaaatctttcaactctat |
8372269 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 8372660 - 8372593
Alignment:
| Q |
18 |
ctttatatttggtcttctcctactactagcttcgacgttgggcttcgtggctccatttttctttctaa |
85 |
Q |
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| T |
8372660 |
ctttatatttggtcttctcctactactaggttcgacgttgggcttcgtggctccatttttctttctaa |
8372593 |
T |
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